RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 STAG2Q8N3U4 1231 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 FBF1Q8TES7 1133 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 IFT74Q96LB3 600 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 KRT12Q99456 494 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 ARHGEF10LQ9HCE6 1279 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 HSFX1Q9UBD0 423 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 STK24Q9Y6E0 443 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 PCDH11XQ9BZA7 1347 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 ZPR1O75312 459 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 FAM155BO75949 473 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 GFPT2O94808 682 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 PCP11498 1178 aaKnown RBP9.11□□□□□ -0.95
CSMD1-213ENST00000523488 RASA1P20936 1047 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 MUTP22033 750 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 RASA2Q15283 850 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 TMTC2Q8N394 836 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 LARGE2Q8N3Y3 721 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 KLHL29Q96CT2 875 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 NSRP1Q9H0G5 558 aaKnown RBP9.11□□□□□ -0.95
CSMD1-213ENST00000523488 DDX47Q9H0S4 455 aaKnown RBP9.11□□□□□ -0.95
CSMD1-213ENST00000523488 ADGRA3Q8IWK6 1321 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 CNTNAP5Q8WYK1 1306 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 ZSCAN5CA6NGD5 496 aaPredicted RBP9.11□□□□□ -0.95
CSMD1-213ENST00000523488 SPDYE5A6NIY4 337 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 GBP1P32455 592 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 KCNMA1Q12791 1236 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 TMED1Q13445 227 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 DBN1Q16643 649 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 FAM114A1Q8IWE2 563 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 KLHL7Q8IXQ5 586 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 OXER1Q8TDS5 423 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 TAF4BQ92750 862 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 STRBPQ96SI9 672 aaKnown RBP9.11□□□□□ -0.95
CSMD1-213ENST00000523488 TUBGCP2Q9BSJ2 902 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 DISC1Q9NRI5 854 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 NFASCO94856 1347 aa9.11□□□□□ -0.95
CSMD1-213ENST00000523488 TRIM75PA6NK02 468 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 EPHB6O15197 1021 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GPAA1O43292 621 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 HNRNPCL1O60812 293 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 UPP2O95045 317 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CAPNS1P04632 268 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PTENP60484 403 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 TNNC1P63316 161 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 FKBP4Q02790 459 aaKnown RBP eCLIP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GIT2Q14161 759 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PPP2R5EQ16537 467 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ARHGAP18Q8N392 663 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ANKRD13CQ8N6S4 541 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 C12orf50Q8NA57 414 aaPredicted RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 OR2W6PQ8NHA6 318 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CKAP2Q8WWK9 683 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GRAMD1AQ96CP6 724 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 SLC7A6OSQ96CW6 309 aaPredicted RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 TRIM47Q96LD4 638 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 NOX5Q96PH1 765 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 MTFR1LQ9H019 292 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 BLZF1Q9H2G9 400 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 VCXQ9H320 206 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PABPC3Q9H361 631 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ABCF3Q9NUQ8 709 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CEP72Q9P209 647 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 DAAM1Q9Y4D1 1078 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PDHA1P08559 390 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 IFIT1P09914 478 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 FGFR2P21802 821 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 FLT3P36888 993 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PTGIRP43119 386 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 MAGEA1P43355 309 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 SH3BGRP55822 239 aaPredicted RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 TRADDQ15628 312 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 SLC18A3Q16572 532 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CCDC178Q5BJE1 867 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ADGRG6Q86SQ4 1221 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 TMEM174Q8WUU8 243 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 KCNN1Q92952 543 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PPP2R3CQ969Q6 453 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GANQ9H2C0 597 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GOPCQ9HD26 462 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 GRHL1Q9NZI5 618 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 NKX1-2Q9UD57 310 aaPredicted RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 USP15Q9Y4E8 981 aaPredicted RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 RTL9Q8NET4 1388 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 LMNAP02545 664 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 AFPP02771 609 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ITGA6P23229 1130 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 MAGOHP61326 146 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CLUL1Q15846 466 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PROM2Q8N271 834 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 AGGF1Q8N302 714 aaeCLIP9.1□□□□□ -0.953e-8■■■■■ 37.8
CSMD1-213ENST00000523488 P2RX5Q93086 422 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 MAGOHBQ96A72 148 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ELAC2Q9BQ52 826 aaKnown RBP9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ISCA1Q9BUE6 129 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 PPP1R12CQ9BZL4 782 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 CCDC113Q9H0I3 377 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 ZCWPW1Q9H0M4 648 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 DENND2AQ9ULE3 1009 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 KCNJ14Q9UNX9 436 aa9.1□□□□□ -0.95
CSMD1-213ENST00000523488 BICDL2A1A5D9 508 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms