RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 FAM217BQ9NTX9 383 aaPredicted RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 A0A1W2PQC6 194 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 STAMBPO95630 424 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 DR1Q01658 176 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 SLC20A2Q08357 652 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 BRDTQ58F21 947 aaPredicted RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 PDXDC2PQ6P474 469 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 ZBTB8OSQ8IWT0 167 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 TBC1D31Q96DN5 1066 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 MYOM1P52179 1685 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 IPO5O00410 1097 aaKnown RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 CA8P35219 290 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 SPP2Q13103 211 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 AP3B2Q13367 1082 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 TCP11Q8WWU5 503 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 SPATS2LQ9NUQ6 558 aaKnown RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 AMACRQ9UHK6 382 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 SRGNP10124 158 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SLC9A1P19634 815 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 FYB2Q5VWT5 728 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 PROM2Q8N271 834 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SH2D3CQ8N5H7 860 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 EIF2AK1Q9BQI3 630 aaKnown RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 RNF14Q9UBS8 474 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 AGLP35573 1532 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 FAM205AQ6ZU69 1335 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 ANO9A1A5B4 782 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SGK1O00141 431 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 ASNSP08243 561 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 PCK1P35558 622 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 E2F5Q15329 346 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SEC23AQ15436 765 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 ANKRD20A3Q5VUR7 823 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 EMBQ6PCB8 327 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SPATS2Q86XZ4 545 aaKnown RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 GIMAP8Q8ND71 665 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC110Q8TBZ0 833 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 MCUR1Q96AQ8 359 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 PBKQ96KB5 322 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 TMEM206Q9H813 350 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 AS3MTQ9HBK9 375 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 FAM114A2Q9NRY5 505 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 CHORDC1Q9UHD1 332 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SPATA31A1Q5TZJ5 1347 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 BAG6P46379 1132 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SLC8A3P57103 927 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 PPP2R5CQ13362 524 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 MTMR1Q13613 665 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 KLHL14Q9P2G3 628 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 MROH1Q8NDA8 1641 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC160A6NGH7 325 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 K7ERI5 159 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 NDUFB10O96000 172 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 ATP11AP98196 1134 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 ITIH3Q06033 890 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 HP1BP3Q5SSJ5 553 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 LMBRD2Q68DH5 695 aaPredicted RBP12.64□□□□□ -0.39
SYNPO-204ENST00000519664 PPP4R3CPQ6ZMV5 832 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 MAIP1Q8WWC4 291 aa12.64□□□□□ -0.39
SYNPO-204ENST00000519664 SLC37A4O43826 429 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 RNF8O76064 485 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 MAN1A1P33908 653 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 ERVK-24P63145 666 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 PKN1Q16512 942 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 ZC2HC1CQ53FD0 456 aaPredicted RBP12.63□□□□□ -0.39
SYNPO-204ENST00000519664 SLC30A10Q6XR72 485 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 CROCCP2Q86T23 111 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 THNSL1Q8IYQ7 743 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 GDAP1Q8TB36 358 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 LXNQ9BS40 222 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 MAD1L1Q9Y6D9 718 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 LRRD1A4D1F6 860 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 STAM2O75886 525 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 RBBP5Q15291 538 aaKnown RBP12.63□□□□□ -0.39
SYNPO-204ENST00000519664 RNF207Q6ZRF8 634 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 VPS52Q8N1B4 723 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 TTLL6Q8N841 843 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 DCAF4Q8WV16 495 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 STMN2Q93045 179 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 FAM20AQ96MK3 541 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 CEP63Q96MT8 703 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 RILPQ96NA2 401 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 CALN1Q9BXU9 219 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 TCRBV5S4A2TA0A5A2 114 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 ECEL1O95672 775 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 TNNC2P02585 160 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 CDC42EP5Q6NZY7 148 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 PDXDC1Q6P996 788 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 COG1Q8WTW3 980 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 SREK1Q8WXA9 508 aaKnown RBP12.63□□□□□ -0.39
SYNPO-204ENST00000519664 JMJD4Q9H9V9 463 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 ANAPC7Q9UJX3 599 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 SNX12Q9UMY4 172 aa12.63□□□□□ -0.39
SYNPO-204ENST00000519664 FTLP02792 175 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 NFIAQ12857 509 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 IFRD2Q12894 506 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 Q3C1V9 767 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 CYFIP1Q7L576 1253 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 DNAAF5Q86Y56 855 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms