RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 FAM90A8PA6NJQ4 464 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 SOCS5O75159 536 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 TBX6O95947 436 aaPredicted RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM90A13PP0C7W8 464 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM90A24PP0C7X0 464 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 TGFB3P10600 412 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 ATP2B4P23634 1241 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 GSTT1P30711 240 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 STAT3P40763 770 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 NOP2P46087 812 aaKnown RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 AUHQ13825 339 aaKnown RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 LRRC41Q15345 812 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 KRT73Q86Y46 540 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 ELOA2Q8IYF1 753 aaPredicted RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 MICAL1Q8TDZ2 1067 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 WIPF2Q8TF74 440 aaPredicted RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 DDX17Q92841 729 aaKnown RBP0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 MCMBPQ9BTE3 642 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 PRR13Q9NZ81 148 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 DKK2Q9UBU2 259 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 SFMBT1Q9UHJ3 866 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 ZNF652Q9Y2D9 606 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM90A10PA6NDY2 464 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 C22orf46C9J442 243 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 GPR182O15218 404 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 NPHS1O60500 1241 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 CLEC3AO75596 197 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 HTR3BO95264 441 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 HMGCRP04035 888 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 TCEA1P23193 301 aaKnown RBP0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 FPR2P25090 351 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 LLGL1Q15334 1064 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 TSNAXIP1Q2TAA8 658 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 ARSHQ5FYA8 562 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 TMEM164Q5U3C3 297 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 MBLAC2Q68D91 279 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 RCSD1Q6JBY9 416 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 IRF2BP2Q7Z5L9 587 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 NEK8Q86SG6 692 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM193BQ96PV7 902 aaPredicted RBP0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM129BQ96TA1 746 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 BTG4Q9NY30 223 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 HSPBP1Q9NZL4 362 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 FOXJ2Q9P0K8 574 aa0.48□□□□□ -2.33
RNU6-539P-201ENST00000516665 MUC5ACP98088 5654 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 MAST3O60307 1309 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 IGKV3D-20A0A0C4DH25 116 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 PMS2P1A4D2B8 440 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 NCR1O76036 304 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 GYPEP15421 78 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 RAG1P15918 1043 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 KCNQ1P51787 676 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 ADAM15Q13444 863 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 TP53BP2Q13625 1128 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 ELOAQ14241 798 aaKnown RBP0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 RABEP1Q15276 862 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 LARP7Q4G0J3 582 aaKnown RBP eCLIP0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 CFAP70Q5T0N1 1121 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 AKNAD1Q5T1N1 836 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 EEF1DP3Q658K8 133 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 RHBDF2Q6PJF5 856 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 JARID2Q92833 1246 aaPredicted RBP0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 BRF1Q92994 677 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 ZNF524Q96C55 264 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 THOC3Q96J01 351 aaKnown RBP0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 C1QTNF5Q9BXJ0 243 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 NIF3L1Q9GZT8 377 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 OR10A2Q9H208 303 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 SLC17A6Q9P2U8 582 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 PCDHB4Q9Y5E5 795 aa0.47□□□□□ -2.33
RNU6-539P-201ENST00000516665 ARID3CA6NKF2 412 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 TRIM24O15164 1050 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 RECQL4O94761 1208 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 NDUFA10O95299 355 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 EPHB2P29323 1055 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 MRE11P49959 708 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 NPEPPSP55786 919 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 RPS26P62854 115 aaKnown RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 HOXA4Q00056 320 aaPredicted RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 SUPT20HL1Q3ZLR7 823 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 ABHD17BQ5VST6 288 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 CYB5RLQ6IPT4 315 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 SLC2A7Q6PXP3 512 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 ZNF782Q6ZMW2 699 aaPredicted RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 YTHDF3Q7Z739 585 aaKnown RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 FILIP1Q7Z7B0 1213 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 TMEM192Q8IY95 271 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 FBXO41Q8TF61 875 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 ARMC5Q96C12 935 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 SLC46A2Q9BY10 475 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 ZDHHC5Q9C0B5 715 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 MIR1-1HGQ9H1L0 117 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 VPS16Q9H269 839 aa0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 POLR3KQ9Y2Y1 108 aaPredicted RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 PRRC2AP48634 2157 aaKnown RBP0.46□□□□□ -2.34
RNU6-539P-201ENST00000516665 STXBP3O00186 592 aa0.45□□□□□ -2.34
RNU6-539P-201ENST00000516665 DDNO94850 711 aaPredicted RBP0.45□□□□□ -2.34
RNU6-539P-201ENST00000516665 EGR2P11161 476 aaPredicted RBP0.45□□□□□ -2.34
RNU6-539P-201ENST00000516665 SCP2P22307 547 aa0.45□□□□□ -2.34
RNU6-539P-201ENST00000516665 ZNF445P59923 1031 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms