RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 FFAR3O14843 346 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 TBC1D8O95759 1140 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 CELA3BP08861 270 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 IGFBP6P24592 240 aaPredicted RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 PRR5P85299 388 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 RRS1Q15050 365 aaKnown RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 TARBP2Q15633 366 aaKnown RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 PRRT2Q7Z6L0 340 aaPredicted RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 SMAP1Q8IYB5 467 aaPredicted RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 ADGRG2Q8IZP9 1017 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 CNPY4Q8N129 248 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 CNTROBQ8N137 903 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 ADCY4Q8NFM4 1077 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 ZNF622Q969S3 477 aaKnown RBP eCLIP6.83□□□□□ -1.32
NUP54-218ENST00000515460 KLHL25Q9H0H3 589 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 LUC7LQ9NQ29 371 aaKnown RBP6.83□□□□□ -1.32
NUP54-218ENST00000515460 SUSD2Q9UGT4 822 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 KIAA0100Q14667 2235 aaKnown RBP6.82□□□□□ -1.32
NUP54-218ENST00000515460 ANKRD36BQ8N2N9 1353 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 TPM2P07951 284 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 NAT2P11245 290 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 ERCC5P28715 1186 aaPredicted RBP6.82□□□□□ -1.32
NUP54-218ENST00000515460 FOXO4P98177 505 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 SETQ01105 290 aaPredicted RBP6.82□□□□□ -1.32
NUP54-218ENST00000515460 GNL2Q13823 731 aaKnown RBP6.82□□□□□ -1.32
NUP54-218ENST00000515460 HSP90AB2PQ58FF8 381 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 UTP14CQ5TAP6 766 aaKnown RBP6.82□□□□□ -1.32
NUP54-218ENST00000515460 TAF3Q5VWG9 929 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 NLGN1Q8N2Q7 840 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 DEFB123Q8N688 67 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 RXFP1Q9HBX9 757 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 DDX21Q9NR30 783 aaKnown RBP eCLIP6.82□□□□□ -1.32
NUP54-218ENST00000515460 PCDHB10Q9UN67 800 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 FAN1Q9Y2M0 1017 aa6.82□□□□□ -1.32
NUP54-218ENST00000515460 A0A1B0GTL3 188 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 EPHX1P07099 455 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 ATF2P15336 505 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 L1CAMP32004 1257 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 KCNC1P48547 511 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 EEF1DP3Q658K8 133 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 VHLLQ6RSH7 139 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 ANAPC16Q96DE5 110 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 TAF1DQ9H5J8 278 aaPredicted RBP6.81□□□□□ -1.32
NUP54-218ENST00000515460 BCAS3Q9H6U6 928 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 SUGT1Q9Y2Z0 365 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 CHD8Q9HCK8 2581 aa6.81□□□□□ -1.32
NUP54-218ENST00000515460 RGPD5Q99666 1765 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 CYP27B1O15528 508 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 SRGAP3O43295 1099 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 ATF4P18848 351 aaPredicted RBP6.8□□□□□ -1.32
NUP54-218ENST00000515460 EN2P19622 333 aaPredicted RBP6.8□□□□□ -1.32
NUP54-218ENST00000515460 CHRNA5P30532 468 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 MMP14P50281 582 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 SLURP1P55000 103 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 CORO7P57737 925 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 GRB10Q13322 594 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 CST9Q5W186 159 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 RCSD1Q6JBY9 416 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 KIAA1211LQ6NV74 962 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 CRACR2BQ8N4Y2 399 aaPredicted RBP6.8□□□□□ -1.32
NUP54-218ENST00000515460 KLHL6Q8WZ60 621 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 RAPGEF4Q8WZA2 1011 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 FGD4Q96M96 766 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 IPO9Q96P70 1041 aaKnown RBP6.8□□□□□ -1.32
NUP54-218ENST00000515460 PMF1-BGLAPU3KQ54 211 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 TONSLQ96HA7 1378 aa6.8□□□□□ -1.32
NUP54-218ENST00000515460 CGNL1Q0VF96 1302 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 LY75O60449 1722 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 ANKRD34BA5PLL1 514 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 VAMP4O75379 141 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 PLA2G1BP04054 148 aaKnown RBP6.79□□□□□ -1.32
NUP54-218ENST00000515460 SSBP05455 408 aaKnown RBP eCLIP6.79□□□□□ -1.32
NUP54-218ENST00000515460 TCF3P15923 654 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 MC3RP41968 323 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 ZNF143P52747 638 aaPredicted RBP6.79□□□□□ -1.32
NUP54-218ENST00000515460 AMPD2Q01433 879 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 NCAPHQ15003 741 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 DPY19L1Q2PZI1 675 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 TNNI3KQ59H18 835 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 FRMD5Q7Z6J6 570 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 FNIP1Q8TF40 1166 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 RCC1LQ96I51 464 aaKnown RBP6.79□□□□□ -1.32
NUP54-218ENST00000515460 TEPSINQ96N21 525 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 MCMBPQ9BTE3 642 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 CGGBP1Q9UFW8 167 aaPredicted RBP6.79□□□□□ -1.32
NUP54-218ENST00000515460 JAG2Q9Y219 1238 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 USP47Q96K76 1375 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 MON2Q7Z3U7 1717 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 HTTP42858 3142 aa6.79□□□□□ -1.32
NUP54-218ENST00000515460 TRBV23OR9-2A0A075B6M9 112 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 STXBP3O00186 592 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 TRAF5O00463 557 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 AURKAO14965 403 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 SEPHS1P49903 392 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 IRX3P78415 501 aaPredicted RBP6.78□□□□□ -1.32
NUP54-218ENST00000515460 TMF1P82094 1093 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 PLP2Q04941 152 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 POMZP3Q6PJE2 187 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 SYNE4Q8N205 404 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 ARHGEF39Q8N4T4 335 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms