RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ACTN3Q08043 901 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 VPS52Q8N1B4 723 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TMEM206Q9H813 350 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 RAB20Q9NX57 234 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TBK1Q9UHD2 729 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ANAPC5Q9UJX4 755 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF148Q9UQR1 794 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 MIF4GDA9UHW6 222 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 PPEF1O14829 653 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 UCHL3P15374 230 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 MXI1P50539 228 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 QRICH1Q2TAL8 776 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TTBK2Q6IQ55 1244 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 USP38Q8NB14 1042 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 HSD3B7Q9H2F3 369 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 AZI2Q9H6S1 392 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 LCMT1Q9UIC8 334 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 POC1B-GALNT4F8VUJ3 575 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TROVE2P10155 538 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 GRB10Q13322 594 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TRPC3Q13507 836 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 KAZNQ674X7 775 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 CYP4F22Q6NT55 531 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 LRIG3Q6UXM1 1119 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 DDX42Q86XP3 938 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 GDAP1Q8TB36 358 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ANKS1AQ92625 1134 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 N4BP2L2Q92802 583 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 PPP1R12CQ9BZL4 782 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 DNAJC17Q9NVM6 304 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 SYNGAP1Q96PV0 1343 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 UBAP1LF5GYI3 381 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TTI1O43156 1089 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 SLC9A1P19634 815 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 FXR2P51116 673 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 PTK2Q05397 1052 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM182BQ5T319 152 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ANKRD20A3Q5VUR7 823 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 TRIM68Q6AZZ1 485 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 CCDC62Q6P9F0 684 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 CCDC89Q8N998 374 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 RFFLQ8WZ73 363 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 CHMP6Q96FZ7 201 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM20AQ96MK3 541 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 FERMT1Q9BQL6 677 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 GOLPH3Q9H4A6 298 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 KLC4Q9NSK0 619 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 MTMR4Q9NYA4 1195 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 PI4KBQ9UBF8 816 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 FOXP2O15409 715 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ALAS1P13196 640 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 RWDD2BP57060 319 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 AOC3Q16853 763 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 NUGGCQ68CJ6 796 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ARHGEF18Q6ZSZ5 1173 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 NLRX1Q86UT6 975 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 POMGNT1Q8WZA1 660 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 SYN2Q92777 582 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 TMEM51Q9NW97 253 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 TESPA1A2RU30 521 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 PALM3A6NDB9 673 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 PDXKO00764 312 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 CIB2O75838 187 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 USP11P51784 963 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 DMP1Q13316 513 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 CENPPQ6IPU0 288 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 LRRC8CQ8TDW0 803 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 DUSP9Q99956 384 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 DNAI2Q9GZS0 605 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 TCP10L2B9ZVM9 353 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 SMIM22K7EJ46 135 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ABL1P00519 1130 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 CD19P15391 556 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 GPC5P78333 572 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ITPK1Q13572 414 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 AEBP2Q6ZN18 517 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 PHLDB2Q86SQ0 1253 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ANKRD35Q8N283 1001 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 SPATA20Q8TB22 786 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 HDAC7Q8WUI4 952 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 DCAF4Q8WV16 495 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 CASKIN2Q8WXE0 1202 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ISCUQ9H1K1 167 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 A0A087X0T9 212 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM187AA6NFU0 413 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM228BP0C875 321 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 SOX5P35711 763 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 CLEC10AQ8IUN9 316 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 ARHGAP23Q9P227 1491 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 FLT1P17948 1338 aa9.08□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM196BA6NMK8 535 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 NDC80O14777 642 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 SLC37A4O43826 429 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PDHBP11177 359 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TMOD1P28289 359 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GCKP35557 465 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 AARSP49588 968 aaKnown RBP eCLIP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms