RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ABHD15Q6UXT9 468 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 TRIM50Q86XT4 487 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 FAM178BQ8IXR5 827 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 LINC00301Q8NCQ3 95 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 GLG1Q92896 1179 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 VTI1AQ96AJ9 217 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 GLT1D1Q96MS3 346 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 KATNAL1Q9BW62 490 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 AZI2Q9H6S1 392 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 ZNF302Q9NR11 478 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 TBX21Q9UL17 535 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 ZNF215Q9UL58 517 aaPredicted RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 EMSYQ7Z589 1322 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 CHD8Q9HCK8 2581 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 POTEB3A0JP26 581 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 VWA3AA6NCI4 1184 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 EML1O00423 815 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 SPTLC2O15270 562 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 PQBP1O60828 265 aaKnown RBP11.25□□□□□ -0.61
NUP54-203ENST00000504173 F2P00734 622 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 PSEN2P49810 448 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 STAT5BP51692 787 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 CHMP4BP1P59074 171 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 EPHA7Q15375 998 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 IL17AQ16552 155 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 SWSAP1Q6NVH7 229 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 PDXDC2PQ6P474 469 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 POTEBQ6S5H4 581 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 CCDC60Q8IWA6 550 aaPredicted RBP11.25□□□□□ -0.61
NUP54-203ENST00000504173 CHAMP1Q96JM3 812 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 PCYT2Q99447 389 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 C16orf70Q9BSU1 422 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 SMARCAD1Q9H4L7 1026 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 STARD7Q9NQZ5 370 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 GABBR1Q9UBS5 961 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 LRWD1Q9UFC0 647 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 BRWD1Q9NSI6 2320 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 DCHS1Q96JQ0 3298 aa11.25□□□□□ -0.61
NUP54-203ENST00000504173 BAHCC1Q9P281 2608 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 IGKV6D-21A0A0A0MT36 114 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 H3BRB1 525 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 DCXO43602 365 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 MARK3P27448 753 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 PTPN5P54829 565 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 PSMC6P62333 389 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 MFSD10Q14728 455 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 KIAA0753Q2KHM9 967 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 PPP2R2DQ66LE6 453 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 ZNF365Q70YC5 407 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 KRI1Q8N9T8 703 aaKnown RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 BANK1Q8NDB2 785 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 ERMNQ8TAM6 284 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 NEK9Q8TD19 979 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 KCNG4Q8TDN1 519 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 AFAP1L1Q8TED9 768 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 KAT2BQ92831 832 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 ATP6V0A1Q93050 837 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 EIF2AK1Q9BQI3 630 aaKnown RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 MTIF3Q9H2K0 278 aaKnown RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 TUT1Q9H6E5 874 aaKnown RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 ERAP1Q9NZ08 941 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 FBXO2Q9UK22 296 aaPredicted RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 SRPRBQ9Y5M8 271 aaKnown RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 MORC2Q9Y6X9 1032 aaPredicted RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 IGSF9BQ9UPX0 1349 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 PTPRZ1P23471 2315 aaPredicted RBP11.24□□□□□ -0.61
NUP54-203ENST00000504173 CACNA1HO95180 2353 aa11.24□□□□□ -0.61
NUP54-203ENST00000504173 A0A0U1RQG5 324 aaPredicted RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 DCDC2CA8MYV0 355 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 GFRA3O60609 400 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 DKC1O60832 514 aaKnown RBP eCLIP11.23□□□□□ -0.61
NUP54-203ENST00000504173 PPP6R2O75170 966 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 P4HBP07237 508 aaKnown RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 LONP1P36776 959 aaKnown RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 QARSP47897 775 aaKnown RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 ME1P48163 572 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 SLC26A2P50443 739 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 PSMC5P62195 406 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 CYP4A11Q02928 519 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 ITGA7Q13683 1181 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 PDIA5Q14554 519 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 UGCGQ16739 394 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 KRT79Q5XKE5 535 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 HAUS3Q68CZ6 603 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 PLPPR4Q7Z2D5 763 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 CKAP2LQ8IYA6 745 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 IGSF22Q8N9C0 903 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 PRSS33Q8NF86 280 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 SNX29Q8TEQ0 813 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 LEO1Q8WVC0 666 aaPredicted RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 TNPO1Q92973 898 aaKnown RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 DYDC2Q96IM9 177 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 SPATA32Q96LK8 384 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 AK8Q96MA6 479 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 MFSD14AQ96MC6 490 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 LXNQ9BS40 222 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 SCAND2PQ9GZW5 306 aaPredicted RBP11.23□□□□□ -0.61
NUP54-203ENST00000504173 RGL1Q9NZL6 768 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 TRPC6Q9Y210 931 aa11.23□□□□□ -0.61
NUP54-203ENST00000504173 PCDHA11Q9Y5I1 949 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms