RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ANXA13P27216 316 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 SLMAPQ14BN4 828 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 SGO2Q562F6 1265 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 BRDTQ58F21 947 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 NCAPG2Q86XI2 1143 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC13Q8IYE1 715 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 METTL13Q8N6R0 699 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 C21orf2O43822 256 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 JMJD4Q9H9V9 463 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 SNX12Q9UMY4 172 aa11.65□□□□□ -0.54
LIMCH1-205ENST00000503057 P4HBP07237 508 aaKnown RBP11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 TTC19Q6DKK2 380 aaPredicted RBP11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 KCTD17Q8N5Z5 321 aa11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 XXYLT1Q8NBI6 393 aa11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 HPS3Q969F9 1004 aa11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 ATP8A1Q9Y2Q0 1164 aa11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 SYNGAP1Q96PV0 1343 aa11.65□□□□□ -0.55
LIMCH1-205ENST00000503057 PLTPP55058 493 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 PEX3P56589 373 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 ARMC9Q7Z3E5 817 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 ANKRD42Q8N9B4 389 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 FMO2Q99518 471 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 AGPAT5Q9NUQ2 364 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 NR1D1P20393 614 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 SFNP31947 248 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 GADL1Q6ZQY3 521 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 MGARPQ8TDB4 240 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 SUGCTQ9HAC7 445 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 FAM217BQ9NTX9 383 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 WDR64B1ANS9 1081 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 FGGP02679 453 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 SARSP49591 514 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 KRT76Q01546 638 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 ITIH3Q06033 890 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 EDRF1Q3B7T1 1238 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 EFCAB13Q8IY85 973 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 ERGIC2Q96RQ1 377 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 INTS2Q9H0H0 1204 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 CAPN7Q9Y6W3 813 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 GGCXP38435 758 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 PPARDQ03181 441 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 BFSP1Q12934 665 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 CDKAL1Q5VV42 579 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 LRP10Q7Z4F1 713 aa11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 RSRC1Q96IZ7 334 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-205ENST00000503057 FAM237AA0A1B0GTK4 181 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 NCK2O43639 380 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ENTPD3O75355 529 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF18P17022 549 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 EPHA7Q15375 998 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SLFN12LQ6IEE8 588 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF710Q8N1W2 664 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 LXNQ9BS40 222 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 VIPAS39Q9H9C1 493 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SUPT20HL1Q3ZLR7 823 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 PALM2Q8IXS6 379 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 CCHCR1Q8TD31 782 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ANKRD36BP1Q96IX9 119 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 DNAJC7Q99615 494 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 NPHP3-ACAD11A0A0J9YXS1 232 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 PODXLO00592 558 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 VSNL1P62760 191 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SLC18A3Q16572 532 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 TBC1D10BQ4KMP7 808 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 VSIG1Q86XK7 387 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ODF2LQ9ULJ1 636 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF148Q9UQR1 794 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 PITPNM2Q9BZ72 1349 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF233A6NK53 670 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 IPO5O00410 1097 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SART1O43290 800 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 IFNB1P01574 187 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 QARSP47897 775 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 VPS41P49754 854 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 RWDD2BP57060 319 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 GPC5P78333 572 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 MCPH1Q8NEM0 835 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 RTFDC1Q9BY42 306 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KIAA1586Q9HCI6 787 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KCND2Q9NZV8 630 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 PARP4Q9UKK3 1724 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 GOLGA8IPA6NC78 632 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 GOLGA8JA6NMD2 632 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 VAMP7P51809 220 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KRT81Q14533 505 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 MTERF2Q49AM1 385 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SPATA4Q8NEY3 305 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 COG1Q8WTW3 980 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 ADPGKQ9BRR6 497 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KCND1Q9NSA2 647 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 INTS9Q9NV88 658 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KBTBD4Q9NVX7 518 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 KLHL14Q9P2G3 628 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 PLAAQ9Y263 795 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 CAMTA1Q9Y6Y1 1673 aa11.63□□□□□ -0.55
LIMCH1-205ENST00000503057 SOX5P35711 763 aa11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 DRAP1Q14919 205 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-205ENST00000503057 SEPT14Q6ZU15 432 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms