RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 C11orf57Q6ZUT1 292 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 MORC2Q9Y6X9 1032 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 TET3O43151 1660 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 CCDC151A5D8V7 595 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 PNMA6AP0CW24 399 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-215ENST00000496447 SLC35F6Q8N357 371 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 MTRQ99707 1265 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 DAAM1Q9Y4D1 1078 aa14.15□□□□□ -0.14
PTPRF-215ENST00000496447 SEC31AO94979 1220 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 LARGE1O95461 756 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 SERPING1P05155 500 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 LLGL1Q15334 1064 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 TRIM68Q6AZZ1 485 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PHLDB3Q6NSJ2 640 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 FASTKD5Q7L8L6 764 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 SIRT2Q8IXJ6 389 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PRPF38AQ8NAV1 312 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 LRRC8CQ8TDW0 803 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PPP1R13BQ96KQ4 1090 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 CDO1Q16878 200 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 RWDD4Q6NW29 188 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 FBXO38Q6PIJ6 1188 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 HINFPQ9BQA5 517 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 NDST4Q9H3R1 872 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 POTEMA6NI47 508 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 TSPY1Q01534 308 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 RESTQ13127 1097 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PTPN21Q16825 1174 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 MMEL1Q495T6 779 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 CCDC170Q8IYT3 715 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 CERKQ8TCT0 537 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PSPC1Q8WXF1 523 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 ISCA1Q9BUE6 129 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 SAMSN1Q9NSI8 373 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 ZBTB12Q9Y330 459 aaPredicted RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 TTC36A6NLP5 189 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 PGRMC1O00264 195 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 NFKBIAP25963 317 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 COPB2P35606 906 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 C10orf76Q5T2E6 689 aa14.14□□□□□ -0.15
PTPRF-215ENST00000496447 ENOX1Q8TC92 643 aaKnown RBP14.14□□□□□ -0.15
PTPRF-215ENST00000496447 F5H6K3 240 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 HUS1O60921 280 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 KLRC3Q07444 240 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 TMTC4Q5T4D3 741 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SPDYE1Q8NFV5 336 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SFNP31947 248 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 EIF4A3P38919 411 aaKnown RBP14.13□□□□□ -0.15
PTPRF-215ENST00000496447 ATP1A2P50993 1020 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 KIAA1586Q9HCI6 787 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 FAN1Q9Y2M0 1017 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 STAT3P40763 770 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 ZBED6P86452 979 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 CUL4AQ13619 759 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 RNF219Q5W0B1 726 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-215ENST00000496447 RHPN2Q8IUC4 686 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SCN4BQ8IWT1 228 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 DYDC2Q96IM9 177 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SPATA33Q96N06 139 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 GDAQ9Y2T3 454 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 ADCY10Q96PN6 1610 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 GRM4Q14833 912 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SLMAPQ14BN4 828 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 ENAHQ8N8S7 591 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-215ENST00000496447 BEST2Q8NFU1 509 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 FAM20AQ96MK3 541 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 STK38LQ9Y2H1 464 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 A0A087WWV3 80 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 CHUKO15111 745 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 SWSAP1Q6NVH7 229 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 CYB5R4Q7L1T6 521 aa14.13□□□□□ -0.15
PTPRF-215ENST00000496447 HERC5Q9UII4 1024 aaKnown RBP14.13□□□□□ -0.15
PTPRF-215ENST00000496447 DPYSL4O14531 572 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 FTCDO95954 541 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 RPSAP08865 295 aaKnown RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 UNC13DQ70J99 1090 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 NDUFAF2Q8N183 169 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 NHEJ1Q9H9Q4 299 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 F8W8V4 182 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 PSMA2P25787 234 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 SFR1Q86XK3 245 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 SPZ1Q9BXG8 430 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 GABBR1Q9UBS5 961 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 TLK1Q9UKI8 766 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 SCINQ9Y6U3 715 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 LOC102724159A0A0B4J2E5 919 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 FDX1P10109 184 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 PWP2Q15269 919 aaKnown RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZNF699Q32M78 642 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZNF394Q53GI3 561 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 CYP4F22Q6NT55 531 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 TTC30AQ86WT1 665 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 MICALL2Q8IY33 904 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 NEK9Q8TD19 979 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 CCHCR1Q8TD31 782 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 RPAP3Q9H6T3 665 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZWILCHQ9H900 591 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 NGRNQ9NPE2 291 aaKnown RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZNRF3Q9ULT6 936 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 A0A0G2JLW4 131 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms