RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CYBBP04839 570 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 PASD1Q8IV76 773 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 DCAF4Q8WV16 495 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 DHTKD1Q96HY7 919 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-212ENST00000491769 ARAP3Q8WWN8 1544 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 PLS3P13797 630 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 CDC25AP30304 524 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 WASHC5Q12768 1159 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 SUSD4Q5VX71 490 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 SCYL3Q8IZE3 742 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 RAB42Q8N4Z0 105 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 OR6J1Q8NGC5 347 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 PPP1R9AQ9ULJ8 1098 aa14.09□□□□□ -0.15
COL6A3-212ENST00000491769 SERPIND1P05546 499 aa14.08□□□□□ -0.15
COL6A3-212ENST00000491769 ST8SIA6P61647 398 aa14.08□□□□□ -0.15
COL6A3-212ENST00000491769 PCDHA6Q9UN73 950 aa14.08□□□□□ -0.15
COL6A3-212ENST00000491769 PCDHA8Q9Y5H6 950 aa14.08□□□□□ -0.15
COL6A3-212ENST00000491769 UGGT2Q9NYU1 1516 aa14.08□□□□□ -0.15
COL6A3-212ENST00000491769 CASP14P31944 242 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 MAN2A1Q16706 1144 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 PI16Q6UXB8 463 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 SSH3Q8TE77 659 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 TESK2Q96S53 571 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ANTXR1Q9H6X2 564 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ALDH1A1P00352 501 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 STAG1Q8WVM7 1258 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 EFHD1Q9BUP0 239 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 SUN2Q9UH99 717 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 RALAP11233 206 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ALCAMQ13740 583 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 TADA2BQ86TJ2 420 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 NSUN6Q8TEA1 469 aaKnown RBP14.08□□□□□ -0.16
COL6A3-212ENST00000491769 TEX12Q9BXU0 123 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ENC1O14682 589 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 CEP19Q96LK0 163 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 TRAIPQ9BWF2 469 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 BHMT2Q9H2M3 363 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 INTS9Q9NV88 658 aaKnown RBP14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ABCC4O15439 1325 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 CASS4Q9NQ75 786 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 MID2Q9UJV3 735 aa14.08□□□□□ -0.16
COL6A3-212ENST00000491769 ZNF335Q9H4Z2 1342 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-212ENST00000491769 PRAMEF22A3QJZ6 481 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 BRD1O95696 1058 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 ZMYM1Q5SVZ6 1142 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 ATP8A1Q9Y2Q0 1164 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 GRIK1P39086 918 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 ZC3H12BQ5HYM0 836 aaKnown RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 APOA5Q6Q788 366 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 PIGBQ92521 554 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 FAF1Q9UNN5 650 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 ZC3H4Q9UPT8 1303 aaKnown RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 TRPA1O75762 1119 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 FKBP3Q00688 224 aaKnown RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 GRAMD1CQ8IYS0 662 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 SEPT8Q92599 483 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 BSDC1Q9NW68 430 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 HEY1Q9Y5J3 304 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 DNAJC8O75937 253 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 FTCDO95954 541 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 CCHCR1Q8TD31 782 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 SIK2Q9H0K1 926 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 SENP1Q9P0U3 644 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 M0QYV0 167 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 PLCG1P19174 1290 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 R3HDM1Q15032 1099 aaKnown RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 KCTD16Q68DU8 428 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 SWSAP1Q6NVH7 229 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 SLC26A7Q8TE54 656 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 DBNLQ9UJU6 430 aaKnown RBP14.07□□□□□ -0.16
COL6A3-212ENST00000491769 JRKLQ9Y4A0 524 aa14.07□□□□□ -0.16
COL6A3-212ENST00000491769 CTSHP09668 335 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 TOGARAM2Q6ZUX3 1019 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ANKS3Q6ZW76 656 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ZFYVE16Q7Z3T8 1539 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 NUP153P49790 1475 aaKnown RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 UBA6A0AVT1 1052 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 HSPA4LO95757 839 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 SLCO1A2P46721 670 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 GTF2H3Q13889 308 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 SLC9A5Q14940 896 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ZNF658Q5TYW1 1059 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 BTBD8Q5XKL5 378 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 FAM213AQ9BRX8 229 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 CAPN7Q9Y6W3 813 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ERVV-1B6SEH8 477 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 TFRCP02786 760 aaKnown RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 CLTAP09496 248 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 TMEM259Q4ZIN3 620 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 KLC2Q9H0B6 622 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ZSWIM6Q9HCJ5 1215 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 DNAJC17Q9NVM6 304 aaKnown RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 RBBP7Q16576 425 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 PYROXD1Q8WU10 500 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 POLR3CQ9BUI4 534 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 CAPS2Q9BXY5 557 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 SYF2O95926 243 aaKnown RBP14.06□□□□□ -0.16
COL6A3-212ENST00000491769 PRELPP51888 382 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 GLYCTKQ8IVS8 523 aa14.06□□□□□ -0.16
COL6A3-212ENST00000491769 ZFYVE28Q9HCC9 887 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms