RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 DDX28Q9NUL7 540 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ARHGEF38Q9NXL2 777 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 MAPK8IP1Q9UQF2 711 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 EPN1Q9Y6I3 576 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ZNF233A6NK53 670 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 MCL1Q07820 350 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 DYMQ7RTS9 669 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 XAGE3Q8WTP9 111 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PRMT1Q99873 361 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 LSM14BQ9BX40 385 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 UPF3AQ9H1J1 476 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 POLD4Q9HCU8 107 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 POLE3Q9NRF9 147 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 JAG2Q9Y219 1238 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ASXL1Q8IXJ9 1541 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 CFBP00751 764 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 DCTN2Q13561 401 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 HIF1AQ16665 826 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TRIM67Q6ZTA4 783 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TAGAPQ8N103 731 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 STAG2Q8N3U4 1231 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PHF21AQ96BD5 680 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 RUNDC3BQ96NL0 473 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 DPH5Q9H2P9 285 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TAB2Q9NYJ8 693 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 GMEB1Q9Y692 573 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 KRT87PA6NCN2 255 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ZBTB7BO15156 539 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 STRNO43815 780 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 EIF3BP55884 814 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TUBA3CQ13748 450 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ME3Q16798 604 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ARHGEF16Q5VV41 709 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PLEKHM3Q6ZWE6 761 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 MRPL50Q8N5N7 158 aaKnown RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 RBBP8NLQ8NC74 664 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ICA1LQ8NDH6 482 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TNIP2Q8NFZ5 429 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PAGR1Q9BTK6 254 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 EHD4Q9H223 541 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 CHPF2Q9P2E5 772 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PCDHB13Q9Y5F0 798 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 UNC13AQ9UPW8 1703 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 SYCE1LA8MT33 242 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 F8VZ95 297 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 IRS4O14654 1257 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 NDUFA8P51970 172 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 MED21Q13503 144 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 RNF220Q5VTB9 566 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ADALQ6DHV7 355 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TTBK2Q6IQ55 1244 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 FAM180AQ6UWF9 173 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 DHX32Q7L7V1 743 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 LARGE2Q8N3Y3 721 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TAB3Q8N5C8 712 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ZIM3Q96PE6 472 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 SERPINI1Q99574 410 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 PREBQ9HCU5 417 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 DDX18Q9NVP1 670 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GOLGA8TH3BQL2 631 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GOLGA8HP0CJ92 632 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 MCF2P10911 925 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ACTN1P12814 892 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ABCB4P21439 1286 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 CARSP49589 748 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ST13P50502 369 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TFAP4Q01664 338 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 CCDC85BQ15834 202 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 DDB1Q16531 1140 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TRIM16LQ309B1 348 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TTC38Q5R3I4 469 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 WDR93Q6P2C0 686 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 LRIG3Q6UXM1 1119 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TPH2Q8IWU9 490 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ZFAND2BQ8WV99 257 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 SRPK1Q96SB4 655 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 RPAP1Q9BWH6 1393 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 KIF14Q15058 1648 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 KDM3AQ9Y4C1 1321 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 FANCD2Q9BXW9 1451 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 RPS6KB1P23443 525 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GRAMD1BQ3KR37 738 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 OTUD7BQ6GQQ9 843 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 SPOPLQ6IQ16 392 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TYW1BQ6NUM6 668 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 RGS9BPQ6ZS82 235 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 TTLL7Q6ZT98 887 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 RDH13Q8NBN7 331 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 NT5C3AQ9H0P0 336 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 KCND1Q9NSA2 647 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 ZFP69BQ9UJL9 534 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 KCNH3Q9ULD8 1083 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 PASKQ96RG2 1323 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GYG2O15488 501 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 GAS7O60861 476 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 CYP2J2P51589 502 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 PMS1P54277 932 aaKnown RBP7.75□□□□□ -1.17
SYNE1-228ENST00000490135 HDAC4P56524 1084 aa7.75□□□□□ -1.17
SYNE1-228ENST00000490135 MRPL28Q13084 256 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms