RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 KCNG4Q8TDN1 519 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 NACC1Q96RE7 527 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 CTAGE1Q96RT6 745 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 LBHD1Q9BQE6 289 aaPredicted RBP12.16□□□□□ -0.46
VPS13D-210ENST00000489961 NOC4LQ9BVI4 516 aaKnown RBP12.16□□□□□ -0.46
VPS13D-210ENST00000489961 PPP1R12CQ9BZL4 782 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 ANKEF1Q9NU02 776 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 WRAP73Q9P2S5 460 aaPredicted RBP12.16□□□□□ -0.46
VPS13D-210ENST00000489961 FBXO2Q9UK22 296 aaPredicted RBP12.16□□□□□ -0.46
VPS13D-210ENST00000489961 PPME1Q9Y570 386 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 PCDHA2Q9Y5H9 948 aa12.16□□□□□ -0.46
VPS13D-210ENST00000489961 TANC1Q9C0D5 1861 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 SMIM35A0A1B0GVV1 85 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 PP2D1A8MPX8 630 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 ZBTB42B2RXF5 422 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 SLC26A4O43511 780 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CAND2O75155 1236 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 PPP6R2O75170 966 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 C22orf31O95567 290 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 XRCC6P12956 609 aaKnown RBP eCLIP12.15□□□□□ -0.467e-6■□□□□ 8.8
VPS13D-210ENST00000489961 TMOD1P28289 359 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CDC25AP30304 524 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 UBA7P41226 1012 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 RBL2Q08999 1139 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 TARBP2Q15633 366 aaKnown RBP12.15□□□□□ -0.46
VPS13D-210ENST00000489961 XKR9Q5GH70 373 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 PLA2G4FQ68DD2 849 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 POTEGQ6S5H5 508 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CABP7Q86V35 215 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 DHX38Q92620 1227 aaKnown RBP12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CALML4Q96GE6 196 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CDK5RAP3Q96JB5 506 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CEP170P1Q96L14 293 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 IPO9Q96P70 1041 aaKnown RBP12.15□□□□□ -0.46
VPS13D-210ENST00000489961 JPH2Q9BR39 696 aaPredicted RBP12.15□□□□□ -0.46
VPS13D-210ENST00000489961 NT5C3AQ9H0P0 336 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CSRNP2Q9H175 543 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 CYP26B1Q9NR63 512 aa12.15□□□□□ -0.46
VPS13D-210ENST00000489961 EVPLQ92817 2033 aa12.15□□□□□ -0.47
VPS13D-210ENST00000489961 TCHHQ07283 1943 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 TMEM150BA6NC51 233 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 H0YGN5 161 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 CKBP12277 381 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 SELPP16109 830 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 CYP2C18P33260 490 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 TXLNAP40222 546 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 THPOP40225 353 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 RFC5P40937 340 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 NPEPPSP55786 919 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 GRIN1Q05586 938 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 ZRSR1Q15695 479 aaKnown RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 TRIM71Q2Q1W2 868 aaKnown RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 MFSD5Q6N075 450 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 EFCAB12Q6NXP0 572 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 RUFY4Q6ZNE9 571 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 RPAINQ86UA6 219 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 TMEM199Q8N511 208 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 KCTD17Q8N5Z5 321 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 METTL13Q8N6R0 699 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 RASSF8Q8NHQ8 419 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 PIGOQ8TEQ8 1089 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 DNAJB3Q8WWF6 145 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 SLC7A3Q8WY07 619 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 WNT8BQ93098 351 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 ZBTB10Q96DT7 871 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 SH2D3AQ9BRG2 576 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 MMTAG2Q9BU76 263 aaKnown RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 FAM49AQ9H0Q0 323 aaPredicted RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 DDX19AQ9NUU7 478 aaKnown RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 CHMP5Q9NZZ3 219 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 DBR1Q9UK59 544 aaKnown RBP12.14□□□□□ -0.47
VPS13D-210ENST00000489961 KIAA1024Q9UPX6 916 aa12.14□□□□□ -0.47
VPS13D-210ENST00000489961 UMODL1Q5DID0 1318 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 M0QZ92 97 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 ZBTB39O15060 712 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CUTAO60888 179 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 MAFO75444 373 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-210ENST00000489961 PARNO95453 639 aaKnown RBP12.13□□□□□ -0.47
VPS13D-210ENST00000489961 ME1P48163 572 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 RARRES1P49788 294 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 DNM2P50570 870 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 POLGP54098 1239 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CCL23P55773 120 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 HYIQ5T013 277 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 IER5Q5VY09 327 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 LRRC8DQ7L1W4 858 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 NME8Q8N427 588 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 BADQ92934 168 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 SPATA32Q96LK8 384 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CLIC6Q96NY7 704 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CEP89Q96ST8 783 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 MAP7D2Q96T17 732 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CCSER1Q9C0I3 900 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 SCAND2PQ9GZW5 306 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-210ENST00000489961 SUGCTQ9HAC7 445 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 CCDC39Q9UFE4 941 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 RCOR1Q9UKL0 485 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 DNM3Q9UQ16 869 aa12.13□□□□□ -0.47
VPS13D-210ENST00000489961 DNAH12Q6ZR08 3092 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 ARHGEF35A5YM69 484 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms