RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SPATA1Q5VX52 437 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 IQSEC1Q6DN90 963 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 EPM2AIP1Q7L775 607 aaPredicted RBP12.74□□□□□ -0.37
C9orf3-220ENST00000489318 SFR1Q86XK3 245 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 TRMT44Q8IYL2 757 aaKnown RBP12.74□□□□□ -0.37
C9orf3-220ENST00000489318 DAW1Q8N136 415 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 PPTC7Q8NI37 304 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 NELFBQ8WX92 580 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 COPS5Q92905 334 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 FAM167AQ96KS9 214 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 SPATA33Q96N06 139 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 FIZ1Q96SL8 496 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 CEP89Q96ST8 783 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 PDLIM7Q9NR12 457 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 RNF186Q9NXI6 227 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 SAGE1Q9NXZ1 904 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 CTNND2Q9UQB3 1225 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 NFE2L3Q9Y4A8 694 aa12.74□□□□□ -0.37
C9orf3-220ENST00000489318 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 TMEM150BA6NC51 233 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 RSPH10B2B2RC85 870 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 NOP56O00567 594 aaKnown RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 EIF3DO15371 548 aaKnown RBP eCLIP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 ADCY6O43306 1168 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 SORBS3O60504 671 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 DGAT1O75907 488 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 RSPH10BP0C881 870 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 MAPTP10636 758 aaKnown RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 SMPD1P17405 629 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 CYP2B6P20813 491 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 STAT5BP51692 787 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 RTP1P59025 263 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 TPM4P67936 248 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 SP3Q02447 781 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 TARBP2Q15633 366 aaKnown RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 CCL14Q16627 93 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 ZCWPW2Q504Y3 356 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 XKR9Q5GH70 373 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 HERC4Q5GLZ8 1057 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 CDKAL1Q5VV42 579 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 PLA2G4FQ68DD2 849 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 CENPPQ6IPU0 288 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 TTI2Q6NXR4 508 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 KCNN1Q92952 543 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 P2RX5Q93086 422 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 HPS3Q969F9 1004 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 PPP1R9BQ96SB3 815 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 FGFBP2Q9BYJ0 223 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 ARHGAP39Q9C0H5 1083 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 PARVGQ9HBI0 331 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 SLC39A2Q9NP94 309 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 CYP26B1Q9NR63 512 aa12.73□□□□□ -0.37
C9orf3-220ENST00000489318 ZHX1Q9UKY1 873 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 GNEQ9Y223 722 aaKnown RBP12.73□□□□□ -0.37
C9orf3-220ENST00000489318 FRMPD3Q5JV73 1810 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 BICDL2A1A5D9 508 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 USO1O60763 962 aaKnown RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 HIP1RO75146 1068 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 PPP1R37O75864 691 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 FAM13AO94988 1023 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 KIF20AO95235 890 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 TBC1D8O95759 1140 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 NPEPPSP55786 919 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 CAP1Q01518 475 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 LRRC63Q05C16 580 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 RAD51AP2Q09MP3 1159 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 CCDC173Q0VFZ6 552 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 CCDC144BQ3MJ40 725 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 UTP14CQ5TAP6 766 aaKnown RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 KLHL10Q6JEL2 608 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 MYOCDQ8IZQ8 938 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 GLIS3Q8NEA6 775 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 MCPH1Q8NEM0 835 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 ATP8B4Q8TF62 1192 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 SCFD1Q8WVM8 642 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 BBXQ8WY36 941 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 ANP32BQ92688 251 aaKnown RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 DRC1Q96MC2 740 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 CCDC43Q96MW1 224 aaKnown RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 STRA6Q9BX79 667 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 ST6GALNAC4Q9H4F1 302 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 DHX33Q9H6R0 707 aaKnown RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 AZI2Q9H6S1 392 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 C17orf75Q9HAS0 396 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 XPNPEP1Q9NQW7 623 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 FANCLQ9NW38 375 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 SEPT9Q9UHD8 586 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-220ENST00000489318 Q9Y3F1 56 aa12.72□□□□□ -0.37
C9orf3-220ENST00000489318 TRIM49BA6NDI0 452 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 GNRH1P01148 92 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 LGALS2P05162 132 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 CYBAP13498 195 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 RFC5P40937 340 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 PMS1P54277 932 aaKnown RBP12.71□□□□□ -0.37
C9orf3-220ENST00000489318 TNFAIP2Q03169 654 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 ALCAMQ13740 583 aa12.71□□□□□ -0.37
C9orf3-220ENST00000489318 GJC2Q5T442 439 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-220ENST00000489318 ZC3H3Q8IXZ2 948 aaKnown RBP12.71□□□□□ -0.37
C9orf3-220ENST00000489318 NOC3LQ8WTT2 800 aaKnown RBP12.71□□□□□ -0.37
C9orf3-220ENST00000489318 TRIB2Q92519 343 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms