RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TPH2Q8IWU9 490 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 IGSF22Q8N9C0 903 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 RASSF8Q8NHQ8 419 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 AFAP1L1Q8TED9 768 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 LEO1Q8WVC0 666 aaPredicted RBP11.54□□□□□ -0.56
SKA1-204ENST00000488454 EIF2AK1Q9BQI3 630 aaKnown RBP11.54□□□□□ -0.56
SKA1-204ENST00000488454 C16orf70Q9BSU1 422 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 C11orf49Q9H6J7 331 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 ZSWIM4Q9H7M6 989 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 FBXO2Q9UK22 296 aaPredicted RBP11.54□□□□□ -0.56
SKA1-204ENST00000488454 TELO2Q9Y4R8 837 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 KIAA1217Q5T5P2 1943 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 EMSYQ7Z589 1322 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 LRRC37A2A6NM11 1700 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 IGKV6D-21A0A0A0MT36 114 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 A0A1W2PQ45 241 aaPredicted RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 A0A1W2PQY0 241 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 GOLGA6L4A6NEF3 574 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 CUTAO60888 179 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 SLITRK3O94933 977 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 F2P00734 622 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 MARK3P27448 753 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 SOX10P56693 466 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 CYP4A11Q02928 519 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 SPIRE1Q08AE8 756 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 ITGA7Q13683 1181 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 ZRSR1Q15695 479 aaKnown RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 KIAA0753Q2KHM9 967 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 OTUD6AQ7L8S5 288 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 TRMT1LQ7Z2T5 733 aaKnown RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 TRIM50Q86XT4 487 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 CCDC60Q8IWA6 550 aaPredicted RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 C7orf31Q8N865 590 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 BANK1Q8NDB2 785 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 SNX29Q8TEQ0 813 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 DYDC2Q96IM9 177 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 PAWRQ96IZ0 340 aaKnown RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 CDK5RAP3Q96JB5 506 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 FAM167AQ96KS9 214 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 SEZ6LQ9BYH1 1024 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 CSRNP2Q9H175 543 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 TUFT1Q9NNX1 390 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 RGL1Q9NZL6 768 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 MAFBQ9Y5Q3 323 aaPredicted RBP11.53□□□□□ -0.56
SKA1-204ENST00000488454 CENPFP49454 3210 aa11.53□□□□□ -0.56
SKA1-204ENST00000488454 A0A0U1RQG5 324 aaPredicted RBP11.52□□□□□ -0.57
SKA1-204ENST00000488454 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 HBP1O60381 514 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 GNAT1P11488 350 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 RPA1P27694 616 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 PSMC6P62333 389 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CTTNQ14247 550 aaKnown RBP11.52□□□□□ -0.57
SKA1-204ENST00000488454 NBPF20Q3BBV1 942 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 XKR3Q5GH77 459 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 FAM47CQ5HY64 1035 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CABP7Q86V35 215 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 C4orf19Q8IY42 314 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 KAT2BQ92831 832 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CALML4Q96GE6 196 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CHAMP1Q96JM3 812 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CCDC43Q96MW1 224 aaKnown RBP11.52□□□□□ -0.57
SKA1-204ENST00000488454 CLIC6Q96NY7 704 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 PCYT2Q99447 389 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 HSD17B14Q9BPX1 270 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 POLR3CQ9BUI4 534 aaPredicted RBP11.52□□□□□ -0.57
SKA1-204ENST00000488454 RNPEPQ9H4A4 650 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 FAM13BQ9NYF5 915 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 CCDC39Q9UFE4 941 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 PCDHA7Q9UN72 937 aa11.52□□□□□ -0.57
SKA1-204ENST00000488454 PP2D1A8MPX8 630 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 ARVCFO00192 962 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 HAS3O00219 553 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 SLC26A4O43511 780 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 OATP04181 439 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 MUTP22033 750 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 CDC25AP30304 524 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 PRKCEQ02156 737 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 GRIN1Q05586 938 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 PLCB4Q15147 1175 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 SPECC1Q5M775 1068 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 ADALQ6DHV7 355 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 NFRKBQ6P4R8 1299 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 SLC39A5Q6ZMH5 540 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 CATSPER3Q86XQ3 398 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 KCTD17Q8N5Z5 321 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 DIS3LQ8TF46 1054 aaKnown RBP11.51□□□□□ -0.57
SKA1-204ENST00000488454 ATP8B4Q8TF62 1192 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 GBP4Q96PP9 640 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 NACC1Q96RE7 527 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 LXNQ9BS40 222 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 NT5C3AQ9H0P0 336 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 GDPD2Q9HCC8 539 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 DNM3Q9UQ16 869 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 KDM3AQ9Y4C1 1321 aa11.51□□□□□ -0.57
SKA1-204ENST00000488454 C17orf102A2RUQ5 167 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 RRN3P2A6NIE6 340 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 MED24O75448 989 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 SPATA31C1P0DKV0 1188 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 COL6A1P12109 1028 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 XRCC6P12956 609 aaKnown RBP eCLIP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms