RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CDCA3Q99618 268 aaPredicted RBP17.58■□□□□ 0.4
MCF2L-228ENST00000487354 RGS18Q9NS28 235 aa17.58■□□□□ 0.4
MCF2L-228ENST00000487354 RNF19AQ9NV58 838 aa17.58■□□□□ 0.4
MCF2L-228ENST00000487354 SEC63Q9UGP8 760 aaKnown RBP17.58■□□□□ 0.4
MCF2L-228ENST00000487354 TBKBP1A7MCY6 615 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 M0QZ92 97 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 SH2B2O14492 632 aaPredicted RBP17.57■□□□□ 0.4
MCF2L-228ENST00000487354 MAFGO15525 162 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 ATG7O95352 703 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 CCNE2O96020 404 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 ARP10275 920 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 KIF5BP33176 963 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 APOBRQ0VD83 1088 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 TYW1BQ6NUM6 668 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 ANKRD54Q6NXT1 300 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 KIAA0319LQ8IZA0 1049 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 RASGRP4Q8TDF6 673 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 NEK1Q96PY6 1258 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 MXRA8Q9BRK3 442 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 LZTS2Q9BRK4 669 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 TYW1Q9NV66 732 aaKnown RBP17.57■□□□□ 0.4
MCF2L-228ENST00000487354 LRFN2Q9ULH4 789 aa17.57■□□□□ 0.4
MCF2L-228ENST00000487354 HIDE1A8MVS5 230 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 SGSM2O43147 1006 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 FGFR1P11362 822 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 IBSPP21815 317 aaPredicted RBP17.56■□□□□ 0.4
MCF2L-228ENST00000487354 STAT5BP51692 787 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 NFX1Q12986 1120 aaKnown RBP17.56■□□□□ 0.4
MCF2L-228ENST00000487354 RAB11FIP4Q86YS3 637 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 NME8Q8N427 588 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 MAP4K1Q92918 833 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 PGBD1Q96JS3 809 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 ADAM2Q99965 735 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 AZI2Q9H6S1 392 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 PCDHB7Q9Y5E2 793 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 PCDHB12Q9Y5F1 795 aa17.56■□□□□ 0.4
MCF2L-228ENST00000487354 FAM186AA6NE01 2351 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 RIF1Q5UIP0 2472 aaKnown RBP17.55■□□□□ 0.4
MCF2L-228ENST00000487354 SPDYE3A6NKU9 549 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 FAM189BP81408 668 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 DSC3Q14574 896 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 PLPP4Q5VZY2 271 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 LRRC55Q6ZSA7 311 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 FAM228AQ86W67 206 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 EXOC6Q8TAG9 804 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 MICAL1Q8TDZ2 1067 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 APOL5Q9BWW9 433 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 AGO4Q9HCK5 861 aaKnown RBP17.55■□□□□ 0.4
MCF2L-228ENST00000487354 TMEM260Q9NX78 707 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 ST3GAL5Q9UNP4 418 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 LZTS1Q9Y250 596 aa17.55■□□□□ 0.4
MCF2L-228ENST00000487354 PROB1E7EW31 1015 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 PRC1O43663 620 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 RPS6KA5O75582 802 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 ATP4AP20648 1035 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 SP100P23497 879 aaPredicted RBP17.54■□□□□ 0.4
MCF2L-228ENST00000487354 KLRC1P26715 233 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 TECP42680 631 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 PLCB3Q01970 1234 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 TMTC3Q6ZXV5 915 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 SLC24A5Q71RS6 500 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 CCDC60Q8IWA6 550 aaPredicted RBP17.54■□□□□ 0.4
MCF2L-228ENST00000487354 THNSL1Q8IYQ7 743 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 RIPOR3Q96MK2 946 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 MTA3Q9BTC8 594 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 SMOC2Q9H3U7 446 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 C1orf112Q9NSG2 853 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 GINS2Q9Y248 185 aa17.54■□□□□ 0.4
MCF2L-228ENST00000487354 RBM8AQ9Y5S9 174 aaKnown RBP17.54■□□□□ 0.4
MCF2L-228ENST00000487354 CNTNAP5Q8WYK1 1306 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 FSD2A1L4K1 749 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 H0Y858 1186 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 PBX3P40426 434 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 GNAQP50148 359 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 SPOUT1Q5T280 376 aaKnown RBP17.53■□□□□ 0.4
MCF2L-228ENST00000487354 WWC2Q6AWC2 1192 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 PDE12Q6L8Q7 609 aaKnown RBP17.53■□□□□ 0.4
MCF2L-228ENST00000487354 LLGL2Q6P1M3 1020 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 ABHD15Q6UXT9 468 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 ASCL5Q7RTU5 278 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 MRPS27Q92552 414 aaKnown RBP17.53■□□□□ 0.4
MCF2L-228ENST00000487354 ATOH1Q92858 354 aaPredicted RBP17.53■□□□□ 0.4
MCF2L-228ENST00000487354 CASD1Q96PB1 797 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 PPP1R16BQ96T49 567 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 AAASQ9NRG9 546 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 TMEM161AQ9NX61 479 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 PTPRZ1P23471 2315 aaPredicted RBP17.53■□□□□ 0.4
MCF2L-228ENST00000487354 COL1A2P08123 1366 aa17.53■□□□□ 0.4
MCF2L-228ENST00000487354 C2orf16Q68DN1 1984 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 DENND3A2RUS2 1198 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 MEIS1O00470 390 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 DHX15O43143 795 aaKnown RBP17.52■□□□□ 0.4
MCF2L-228ENST00000487354 GPR32O75388 356 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 C22orf31O95567 290 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 BRD1O95696 1058 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 LAG3P18627 525 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 SLC26A2P50443 739 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 CEP55Q53EZ4 464 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 HEATR3Q7Z4Q2 680 aa17.52■□□□□ 0.4
MCF2L-228ENST00000487354 CCDC82Q8N4S0 544 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms