RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C22orf31O95567 290 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 P4HBP07237 508 aaKnown RBP16.56■□□□□ 0.24
USP4-212ENST00000486549 HSP90AA1P07900 732 aaKnown RBP16.56■□□□□ 0.24
USP4-212ENST00000486549 PDCP20941 246 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 QARSP47897 775 aaKnown RBP16.56■□□□□ 0.24
USP4-212ENST00000486549 MRPS6P82932 125 aaKnown RBP16.56■□□□□ 0.24
USP4-212ENST00000486549 CTTNQ14247 550 aaKnown RBP16.56■□□□□ 0.24
USP4-212ENST00000486549 XKR3Q5GH77 459 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 FERMT3Q86UX7 667 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 METTL13Q8N6R0 699 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 SLC17A8Q8NDX2 589 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 LXNQ9BS40 222 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 RGL1Q9NZL6 768 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 CDY2AQ9Y6F7 541 aa16.56■□□□□ 0.24
USP4-212ENST00000486549 GBF1Q92538 1859 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 ARID2Q68CP9 1835 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 M0QZ92 97 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 CHRNA1P02708 482 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 CXCL10P02778 98 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 TECP42680 631 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 TCTN1Q2MV58 587 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 RILPL1Q5EBL4 403 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 FAM26DQ5JW98 314 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 RASIP1Q5U651 963 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 PLA2G4FQ68DD2 849 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 CNKSR3Q6P9H4 555 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 RPAINQ86UA6 219 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 TPH2Q8IWU9 490 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 PPP1R16BQ96T49 567 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 EIF2AK1Q9BQI3 630 aaKnown RBP16.55■□□□□ 0.24
USP4-212ENST00000486549 OSBPL7Q9BZF2 842 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 WRAP73Q9P2S5 460 aaPredicted RBP16.55■□□□□ 0.24
USP4-212ENST00000486549 MSRAQ9UJ68 235 aa16.55■□□□□ 0.24
USP4-212ENST00000486549 LAMA2P24043 3122 aaKnown RBP16.54■□□□□ 0.24
USP4-212ENST00000486549 GRXCR1A8MXD5 290 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 DKC1O60832 514 aaKnown RBP eCLIP16.54■□□□□ 0.24
USP4-212ENST00000486549 STBD1O95210 358 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 RPLP2P05387 115 aaKnown RBP16.54■□□□□ 0.24
USP4-212ENST00000486549 GHRP10912 638 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 SYT1P21579 422 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 DNAJB2P25686 324 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 CLCN3P51790 818 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 MGAT3Q09327 533 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 TBC1D8BQ0IIM8 1120 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 PTGDRQ13258 359 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 RAB30Q15771 203 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 TMEM266Q2M3C6 531 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 IER5Q5VY09 327 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 LRRC71Q8N4P6 559 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 SPRYD3Q8NCJ5 442 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 SUGCTQ9HAC7 445 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 GINS2Q9Y248 185 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 TRPV2Q9Y5S1 764 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 SLC4A7Q9Y6M7 1214 aa16.54■□□□□ 0.24
USP4-212ENST00000486549 MICAL3Q7RTP6 2002 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 MAGEB2O15479 319 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 EFCAB12Q6NXP0 572 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 ANO5Q75V66 913 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 KIAA0319LQ8IZA0 1049 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 C4orf32Q8N8J7 132 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 DBF4BQ8NFT6 615 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 TIFAQ96CG3 184 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 FAM161BQ96MY7 647 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 GUCD1Q96NT3 240 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 NIFKQ9BYG3 293 aaKnown RBP16.53■□□□□ 0.24
USP4-212ENST00000486549 ZSWIM4Q9H7M6 989 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.53■□□□□ 0.24
USP4-212ENST00000486549 AKT3Q9Y243 479 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 PTPRSQ13332 1948 aa16.53■□□□□ 0.24
USP4-212ENST00000486549 BAIAP3O94812 1187 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 SLITRK3O94933 977 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 VTNP04004 478 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 YWHABP31946 246 aaKnown RBP16.52■□□□□ 0.24
USP4-212ENST00000486549 KCNJ6P48051 423 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 NPEPPSP55786 919 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 LPIN1Q14693 890 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 TARBP2Q15633 366 aaKnown RBP16.52■□□□□ 0.24
USP4-212ENST00000486549 PLEKHG4Q58EX7 1191 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 BRAPQ7Z569 592 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 C4orf19Q8IY42 314 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 NME8Q8N427 588 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 NEK9Q8TD19 979 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 SEPT8Q92599 483 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 CEP170P1Q96L14 293 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 MAP7D2Q96T17 732 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 CDX2Q99626 313 aaPredicted RBP16.52■□□□□ 0.24
USP4-212ENST00000486549 CYP26B1Q9NR63 512 aa16.52■□□□□ 0.24
USP4-212ENST00000486549 BMP2KQ9NSY1 1161 aaPredicted RBP16.52■□□□□ 0.24
USP4-212ENST00000486549 ZBTB39O15060 712 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 ATP2A2P16615 1042 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 TMOD1P28289 359 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 WDR5P61964 334 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 IKBKEQ14164 716 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 XKR9Q5GH70 373 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 FBXO47Q5MNV8 452 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 ZNF579Q8NAF0 562 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 ERMNQ8TAM6 284 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 ZNF668Q96K58 619 aaPredicted RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 CCDC43Q96MW1 224 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 HSD17B14Q9BPX1 270 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms