RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MAD2L2Q9UI95 211 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PCDHB4Q9Y5E5 795 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 FHOD1Q9Y613 1164 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 IFT172Q9UG01 1749 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 C3P01024 1663 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 CAMTA1Q9Y6Y1 1673 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 ATP5DP30049 168 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PCK1P35558 622 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 CLUL1Q15846 466 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 CEP55Q53EZ4 464 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 KCTD16Q68DU8 428 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 MICAL1Q8TDZ2 1067 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 NSUN6Q8TEA1 469 aaKnown RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 EIF2AK1Q9BQI3 630 aaKnown RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 RAB17Q9H0T7 212 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PLCB1Q9NQ66 1216 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 TBC1D22BQ9NU19 505 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PDS5AQ29RF7 1337 aaKnown RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 K7ERI5 159 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 CHUKO15111 745 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 FDX1P10109 184 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 MRPS9P82933 396 aaKnown RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 DPYDQ12882 1025 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 KCNB1Q14721 858 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PTPAQ15257 358 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 LLGL1Q15334 1064 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 NTRK3Q16288 839 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PROCA1Q8NCQ7 364 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 FBXO41Q8TF61 875 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 FAM151AQ8WW52 585 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 ACTR5Q9H9F9 607 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-228ENST00000486227 SERPINA10Q9UK55 444 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 PRR12Q9ULL5 1215 aa11.93□□□□□ -0.5
HDAC6-228ENST00000486227 ZBTB24O43167 697 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 SRGAP2CP0DJJ0 459 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 SRGNP10124 158 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 HMGCS2P54868 508 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 TFAMQ00059 246 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 GUCY2DQ02846 1103 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 KCNH2Q12809 1159 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ANKRD40Q6AI12 368 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 PTF1AQ7RTS3 328 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 RTFDC1Q9BY42 306 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 TMEM39BQ9GZU3 492 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 JAK3P52333 1124 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 BPIFB4P59827 614 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 KNOP1Q1ED39 458 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ALKBH5Q6P6C2 394 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 RBM43Q6ZSC3 357 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ZBTB33Q86T24 672 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 CCDC63Q8NA47 563 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 KRT12Q99456 494 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 APOL6Q9BWW8 343 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 TXNDC16Q9P2K2 825 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ADGRG1Q9Y653 693 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 MYO1FO00160 1098 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 OSTNP61366 133 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 STXBP2Q15833 593 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 SESTD1Q86VW0 696 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ZNF653Q96CK0 615 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 CEP63Q96MT8 703 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 LXNQ9BS40 222 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 RPAP3Q9H6T3 665 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 CD2APQ9Y5K6 639 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 P4HBP07237 508 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 GBP1P32455 592 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 QARSP47897 775 aaKnown RBP11.92□□□□□ -0.5
HDAC6-228ENST00000486227 EMBQ6PCB8 327 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 MAIP1Q8WWC4 291 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 PPP1R16BQ96T49 567 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 NKIRAS1Q9NYS0 192 aa11.92□□□□□ -0.5
HDAC6-228ENST00000486227 ALDH3A1P30838 453 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 STK4Q13043 487 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 MTMR2Q13614 643 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 PRAMEF18Q5VWM3 479 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 TAOK1Q7L7X3 1001 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 LRRC53A6NM62 1247 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 SLC16A4O15374 487 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 RPS12P25398 132 aaKnown RBP11.91□□□□□ -0.5
HDAC6-228ENST00000486227 COPB2P35606 906 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 KRT76Q01546 638 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 ALCAMQ13740 583 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 PPFIBP2Q8ND30 876 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 GMPSP49915 693 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-228ENST00000486227 TOB1P50616 345 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-228ENST00000486227 TSNAXIP1Q2TAA8 658 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 ADSSL1Q8N142 457 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 PRMT6Q96LA8 375 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-228ENST00000486227 STIM2Q9P246 746 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 HESX1Q9UBX0 185 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 NPHP3-ACAD11A0A0J9YXS1 232 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 NNTQ13423 1086 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 SCYL2Q6P3W7 929 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 RBM46Q8TBY0 533 aaKnown RBP11.91□□□□□ -0.5
HDAC6-228ENST00000486227 SH2D3AQ9BRG2 576 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 MED10Q9BTT4 135 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 VCPKMTQ9H867 229 aa11.91□□□□□ -0.5
HDAC6-228ENST00000486227 NAALADL2Q58DX5 795 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 ANGEL2Q5VTE6 544 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 NLRP4Q96MN2 994 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms