RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 GJB5O95377 273 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 AMHP03971 560 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 CA3P07451 260 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 INSRRP14616 1297 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 POU3F3P20264 500 aaPredicted RBP19.14■□□□□ 0.65
VIM-205ENST00000485947 MARK3P27448 753 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 EARS2Q5JPH6 523 aaKnown RBP19.14■□□□□ 0.65
VIM-205ENST00000485947 MARCH8Q5T0T0 291 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 IER5Q5VY09 327 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 POTEBQ6S5H4 581 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 RIT2Q99578 217 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 ZBED2Q9BTP6 218 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 LMBRD1Q9NUN5 540 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 TRPC6Q9Y210 931 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 PCDHA2Q9Y5H9 948 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 COL1A2P08123 1366 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 CYP3A7-CYP3A51PA0A087WV96 503 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 TNFRSF10AO00220 468 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 CCNE2O96020 404 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 CYP3A7P24462 503 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 PLCB4Q15147 1175 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 STK38Q15208 465 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 PRR16Q569H4 304 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 LINC00301Q8NCQ3 95 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 RASGRP4Q8TDF6 673 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 KCNG4Q8TDN1 519 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 ATP8B4Q8TF62 1192 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 PRDM12Q9H4Q4 367 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 GDPD2Q9HCC8 539 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 PCDHA10Q9Y5I2 948 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 DOCK5Q9H7D0 1870 aa19.13■□□□□ 0.65
VIM-205ENST00000485947 KAT6AQ92794 2004 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 SMIM35A0A1B0GVV1 85 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 BACH1O14867 736 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 ADAMTS3O15072 1205 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 PRPF40AO75400 957 aaKnown RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 PSAPP07602 524 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 TOB1P50616 345 aaPredicted RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 ORC2Q13416 577 aaPredicted RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 SLC39A14Q15043 492 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 SF3A1Q15459 793 aaKnown RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 Q4G0T1 1027 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 TJAP1Q5JTD0 557 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 ZNF484Q5JVG2 852 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 TTC38Q5R3I4 469 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 ZNF710Q8N1W2 664 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 LENG9Q96B70 501 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 ZNF302Q9NR11 478 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 INSL6Q9Y581 213 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 MAFBQ9Y5Q3 323 aaPredicted RBP19.12■□□□□ 0.65
VIM-205ENST00000485947 CLIC4Q9Y696 253 aa19.12■□□□□ 0.65
VIM-205ENST00000485947 FAM205CA6NFA0 338 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 M0QZ92 97 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 CHRNA1P02708 482 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 CTSHP09668 335 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 MYOGP15173 224 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 SFNP31947 248 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 PLA2G5P39877 138 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 TAP1Q03518 808 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 MGAT3Q09327 533 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 SKOR2Q2VWA4 1001 aaPredicted RBP19.11■□□□□ 0.65
VIM-205ENST00000485947 PDXDC2PQ6P474 469 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 NEK8Q86SG6 692 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 RDM1Q8NG50 284 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 TBCKQ8TEA7 893 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 BBXQ8WY36 941 aaPredicted RBP19.11■□□□□ 0.65
VIM-205ENST00000485947 FAM167AQ96KS9 214 aa19.11■□□□□ 0.65
VIM-205ENST00000485947 NAP1L4Q99733 375 aaKnown RBP19.11■□□□□ 0.65
VIM-205ENST00000485947 IFIH1Q9BYX4 1025 aaKnown RBP19.11■□□□□ 0.65
VIM-205ENST00000485947 KDM3AQ9Y4C1 1321 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 WDR64B1ANS9 1081 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 SPTLC2O15270 562 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 PPP6R2O75170 966 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 UBE2HP62256 183 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 DEFB103AP81534 67 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 MRPS6P82932 125 aaKnown RBP19.1■□□□□ 0.65
VIM-205ENST00000485947 CEBPZQ03701 1054 aaKnown RBP19.1■□□□□ 0.65
VIM-205ENST00000485947 PTPAQ15257 358 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 INF2Q27J81 1249 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 SWSAP1Q6NVH7 229 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 RUFY4Q6ZNE9 571 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 CCDC60Q8IWA6 550 aaPredicted RBP19.1■□□□□ 0.65
VIM-205ENST00000485947 DNAJB3Q8WWF6 145 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 SLC5A5Q92911 643 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 TOP1MTQ969P6 601 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 MBOAT7Q96N66 472 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 PCDHB6Q9Y5E3 794 aa19.1■□□□□ 0.65
VIM-205ENST00000485947 DDX39AO00148 427 aaKnown RBP19.09■□□□□ 0.65
VIM-205ENST00000485947 MBD3O95983 291 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 JAK3P52333 1124 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 IGBP1P78318 339 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 HTRA4P83105 476 aaPredicted RBP19.09■□□□□ 0.65
VIM-205ENST00000485947 TCTN1Q2MV58 587 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 MTHFD1LQ6UB35 978 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 TSHZ1Q6ZSZ6 1077 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 FTHL17Q9BXU8 183 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 LMCD1Q9NZU5 365 aa19.09■□□□□ 0.65
VIM-205ENST00000485947 MYO9BQ13459 2157 aa19.08■□□□□ 0.65
VIM-205ENST00000485947 MSH4O15457 936 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms