RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 PTPRNQ16849 979 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 MARCH8Q5T0T0 291 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 MFSD5Q6N075 450 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 MOXD1Q6UVY6 613 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 LYPD8Q6UX82 237 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 RUFY4Q6ZNE9 571 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 RPAINQ86UA6 219 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 DHX37Q8IY37 1157 aaKnown RBP6.52□□□□□ -1.37
CUX1-208ENST00000485792 REXO1Q8N1G1 1221 aaKnown RBP6.52□□□□□ -1.37
CUX1-208ENST00000485792 CCDC148Q8NFR7 591 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 BADQ92934 168 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 SCLYQ96I15 445 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 CEP89Q96ST8 783 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 C22orf23Q9BZE7 217 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 PRKD2Q9BZL6 878 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 C6orf50Q9HD87 102 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 CXXC1Q9P0U4 656 aaPredicted RBP6.52□□□□□ -1.37
CUX1-208ENST00000485792 GTF2IRD1Q9UHL9 959 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 PCDHA4Q9UN74 947 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 LIMCH1Q9UPQ0 1083 aa6.52□□□□□ -1.37
CUX1-208ENST00000485792 TDRD15B5MCY1 1934 aaKnown RBP6.52□□□□□ -1.37
CUX1-208ENST00000485792 EMSYQ7Z589 1322 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 PDCD11Q14690 1871 aaKnown RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 MBLAC1A4D2B0 266 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 TMEM150BA6NC51 233 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 RNF223E7ERA6 249 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 ZNF862O60290 1169 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 CDKL5O76039 1030 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 SUPT20HL2P0C7V6 817 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 CSF2RAP15509 400 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 CYP2C18P33260 490 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 MTMR1Q13613 665 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 SHHQ15465 462 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 Q4G0T1 1027 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 BRDTQ58F21 947 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 PPP4R3AQ6IN85 833 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 ABHD15Q6UXT9 468 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 Q7L0L9 218 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 CYFIP1Q7L576 1253 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 TMCO2Q7Z6W1 182 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 NLRX1Q86UT6 975 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 CCDC60Q8IWA6 550 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 CCDC83Q8IWF9 413 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 TRIM22Q8IYM9 498 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 TDHQ8IZJ6 230 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 BLIDQ8IZY5 108 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 ETNPPLQ8TBG4 499 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 BICD2Q8TD16 824 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 AFAP1L1Q8TED9 768 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 LRRC15Q8TF66 581 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 TRAPPC12Q8WVT3 735 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 SPATA33Q96N06 139 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 LLPHQ9BRT6 129 aaKnown RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 IRX2Q9BZI1 471 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 PPP1R12CQ9BZL4 782 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 SLKQ9H2G2 1235 aaPredicted RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 RNPEPQ9H4A4 650 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 AGO4Q9HCK5 861 aaKnown RBP6.51□□□□□ -1.37
CUX1-208ENST00000485792 HDAC6Q9UBN7 1215 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 PLXNA4Q9HCM2 1894 aa6.51□□□□□ -1.37
CUX1-208ENST00000485792 IGSF9BQ9UPX0 1349 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 CITO14578 2027 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 PRRC2BQ5JSZ5 2229 aaKnown RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 GRXCR1A8MXD5 290 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 H3BRB1 525 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 EML1O00423 815 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 MSH4O15457 936 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 NBNO60934 754 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 CXCL10P02778 98 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 MYL3P08590 195 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 CCNYL3P0C7X3 344 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 ACRP10323 421 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 SP4Q02446 784 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 MGAT3Q09327 533 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 RABEP1Q15276 862 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 KIAA0753Q2KHM9 967 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 TMEM240Q5SV17 173 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 CPLX2Q6PUV4 134 aaKnown RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 PLPPR4Q7Z2D5 763 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 SERINC5Q86VE9 423 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 LINC01465Q8N7H1 131 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 LRRN4Q8WUT4 740 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 LMBR1Q8WVP7 490 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 LINC01599Q8WXQ3 324 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 SEPT1Q8WYJ6 367 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 HAS1Q92839 578 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 SLC5A5Q92911 643 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 ZSCAN31Q96LW9 406 aaPredicted RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.5□□□□□ -1.375e-11■□□□□ 10.1
CUX1-208ENST00000485792 KATNAL1Q9BW62 490 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 TTYH1Q9H313 450 aaPredicted RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 TUT1Q9H6E5 874 aaKnown RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 EHMT1Q9H9B1 1298 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 KCNMB3Q9NPA1 279 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 PRDM5Q9NQX1 630 aaPredicted RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 SH2B1Q9NRF2 756 aaPredicted RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 TMEM39AQ9NV64 488 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 VAV3Q9UKW4 847 aa6.5□□□□□ -1.37
CUX1-208ENST00000485792 NAP1L2Q9ULW6 460 aaPredicted RBP6.5□□□□□ -1.37
CUX1-208ENST00000485792 MTCL1Q9Y4B5 1905 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms