RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SNW1Q13573 536 aaKnown RBP13.65□□□□□ -0.22
SDC1-206ENST00000482879 DHX8Q14562 1220 aaKnown RBP13.65□□□□□ -0.22
SDC1-206ENST00000482879 MCM6Q14566 821 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 LONRF3Q496Y0 759 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 MTERF2Q49AM1 385 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 PLA2G4FQ68DD2 849 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 CEP57L1Q8IYX8 460 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 PPP1R13LQ8WUF5 828 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 LARP4BQ92615 738 aaKnown RBP13.65□□□□□ -0.22
SDC1-206ENST00000482879 CEP170P1Q96L14 293 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 GLT1D1Q96MS3 346 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 SH2D3AQ9BRG2 576 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 NIFKQ9BYG3 293 aaKnown RBP13.65□□□□□ -0.22
SDC1-206ENST00000482879 BHMT2Q9H2M3 363 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 CUEDC2Q9H467 287 aa13.65□□□□□ -0.22
SDC1-206ENST00000482879 A0A1W2PQ45 241 aaPredicted RBP13.64□□□□□ -0.23
SDC1-206ENST00000482879 A0A1W2PQY0 241 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 ACTN4O43707 911 aaKnown RBP13.64□□□□□ -0.23
SDC1-206ENST00000482879 SLFN14P0C7P3 912 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 SMIM10L2AP0DMW4 78 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 SMIM10L2BP0DMW5 78 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 CAPN2P17655 700 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 RARRES1P49788 294 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 PPFIA1Q13136 1202 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 NFKBIBQ15653 356 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 ZNF484Q5JVG2 852 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 SV2BQ7L1I2 683 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 C7orf31Q8N865 590 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 SYT2Q8N9I0 419 aaPredicted RBP13.64□□□□□ -0.23
SDC1-206ENST00000482879 CNNM3Q8NE01 707 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 CYP26B1Q9NR63 512 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 DACT1Q9NYF0 836 aa13.64□□□□□ -0.23
SDC1-206ENST00000482879 COL1A2P08123 1366 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.63□□□□□ -0.23
SDC1-206ENST00000482879 RRN3P2A6NIE6 340 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 KINO60870 393 aaKnown RBP13.63□□□□□ -0.23
SDC1-206ENST00000482879 MBD3O95983 291 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 MNX1P50219 401 aaPredicted RBP13.63□□□□□ -0.23
SDC1-206ENST00000482879 SLC12A3P55017 1021 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 IGBP1P78318 339 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 ITGA7Q13683 1181 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 TARBP2Q15633 366 aaKnown RBP13.63□□□□□ -0.23
SDC1-206ENST00000482879 GRIK4Q16099 956 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 FAM47CQ5HY64 1035 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 KRBA2Q6ZNG9 492 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 ANKLE1Q8NAG6 615 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 GPT2Q8TD30 523 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 TRAPPC12Q8WVT3 735 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 SENP6Q9GZR1 1112 aaPredicted RBP13.63□□□□□ -0.23
SDC1-206ENST00000482879 MAGEF1Q9HAY2 307 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 STARD7Q9NQZ5 370 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 SETD4Q9NVD3 440 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 HDAC6Q9UBN7 1215 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 GRIN2DO15399 1336 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 NRCAMQ92823 1304 aa13.63□□□□□ -0.23
SDC1-206ENST00000482879 A0A0U1RQG5 324 aaPredicted RBP13.62□□□□□ -0.23
SDC1-206ENST00000482879 ZBTB42B2RXF5 422 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 GNAT1P11488 350 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 AFMP43652 599 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 AMPD3Q01432 767 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 TBC1D8BQ0IIM8 1120 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 RINT1Q6NUQ1 792 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 NFRKBQ6P4R8 1299 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 PADI6Q6TGC4 694 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 GPBP1Q86WP2 473 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 STAMQ92783 540 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 PAGE5Q96GU1 130 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 CCDC34Q96HJ3 373 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 TIGD1Q96MW7 591 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 TNMDQ9H2S6 317 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 KBTBD4Q9NVX7 518 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 PPME1Q9Y570 386 aa13.62□□□□□ -0.23
SDC1-206ENST00000482879 C17orf102A2RUQ5 167 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 MYMKA6NI61 221 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 MAGEB2O15479 319 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 USO1O60763 962 aaKnown RBP13.61□□□□□ -0.23
SDC1-206ENST00000482879 CYP11B2P19099 503 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 EN2P19622 333 aaPredicted RBP13.61□□□□□ -0.23
SDC1-206ENST00000482879 KLRC1P26715 233 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 RFC5P40937 340 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 POLGP54098 1239 aaPredicted RBP13.61□□□□□ -0.23
SDC1-206ENST00000482879 KANK3Q6NY19 840 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 C1orf186Q6ZWK4 172 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 EXOC8Q8IYI6 725 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 GRAMD1CQ8IYS0 662 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 DIS3LQ8TF46 1054 aaKnown RBP13.61□□□□□ -0.23
SDC1-206ENST00000482879 LMBR1Q8WVP7 490 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 ABHD8Q96I13 439 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 CEP89Q96ST8 783 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 RUSC1Q9BVN2 902 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 LRRC27Q9C0I9 530 aa13.61□□□□□ -0.23
SDC1-206ENST00000482879 BMP2KQ9NSY1 1161 aaPredicted RBP13.61□□□□□ -0.23
SDC1-206ENST00000482879 NPHP3-ACAD11A0A0J9YXS1 232 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 ARVCFO00192 962 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 DGAT1O75907 488 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 KRT18P05783 430 aaKnown RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 ZNF200P98182 395 aaPredicted RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 PTPN11Q06124 597 aaPredicted RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 HIC1Q14526 733 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms