RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 UBXN6Q9BZV1 441 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 ZSWIM4Q9H7M6 989 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 GPRC5CQ9NQ84 441 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 ADARB2Q9NS39 739 aaKnown RBP15.9■□□□□ 0.14
CHD3-211ENST00000481999 TMOD4Q9NZQ9 345 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 KIAA1217Q5T5P2 1943 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 ZMYM2Q9UBW7 1377 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 AKAP3O75969 853 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 SASH3O75995 380 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 FAM13AO94988 1023 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 NPEPPSP55786 919 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 CNTN2Q02246 1040 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 KNOP1Q1ED39 458 aaKnown RBP15.9■□□□□ 0.14
CHD3-211ENST00000481999 SUPT20HL1Q3ZLR7 823 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 FKBP15Q5T1M5 1219 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 DCPSQ96C86 337 aaKnown RBP15.9■□□□□ 0.14
CHD3-211ENST00000481999 ERGIC2Q96RQ1 377 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 RIT2Q99578 217 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 NLRC4Q9NPP4 1024 aa15.9■□□□□ 0.14
CHD3-211ENST00000481999 NR3C2P08235 984 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 SOX10P56693 466 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 CYP27A1Q02318 531 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 C12orf42Q96LP6 360 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 ADAMTS5Q9UNA0 930 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 MYH11P35749 1972 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 OTOFQ9HC10 1997 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 TGFB1I1O43294 461 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 USO1O60763 962 aaKnown RBP15.89■□□□□ 0.13
CHD3-211ENST00000481999 HIP1RO75146 1068 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 GHRHRQ02643 423 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 MSANTD4Q8NCY6 345 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 HNRNPLLQ8WVV9 542 aaKnown RBP15.89■□□□□ 0.13
CHD3-211ENST00000481999 NACC1Q96RE7 527 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 FUT8Q9BYC5 575 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 HAUS4Q9H6D7 363 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 GINM1Q9NU53 330 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 CYP39A1Q9NYL5 469 aa15.89■□□□□ 0.13
CHD3-211ENST00000481999 C19orf81C9J6K1 198 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 BCRP11274 1271 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 MAPK7Q13164 816 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 LONRF2Q1L5Z9 754 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 ODR4Q5SWX8 454 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 RETREG2Q8NC44 543 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 NUP58Q9BVL2 599 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 ANKZF1Q9H8Y5 726 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 PARVGQ9HBI0 331 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 BTBD7Q9P203 1132 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 PCDHB13Q9Y5F0 798 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 PTPRFP10586 1907 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 FRMPD4Q14CM0 1322 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 WDR90Q96KV7 1748 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 CTAGE15A4D2H0 777 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 ARHGEF35A5YM69 484 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 RCCD1A6NED2 376 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 LRRC53A6NM62 1247 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 CTAGE8P0CG41 777 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 ACTN1P12814 892 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 DCAF17Q5H9S7 520 aaPredicted RBP15.88■□□□□ 0.13
CHD3-211ENST00000481999 PADI6Q6TGC4 694 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 GADL1Q6ZQY3 521 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 CTAGE6Q86UF2 777 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 CTAGE4Q8IX94 777 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 TEX13BQ9BXU2 312 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 RAB21Q9UL25 225 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 DUSP10Q9Y6W6 482 aa15.88■□□□□ 0.13
CHD3-211ENST00000481999 FAM170AA1A519 330 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 TULP1O00294 542 aaPredicted RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 POTEJP0CG39 1038 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 SMC1AQ14683 1233 aaKnown RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 RRAGAQ7L523 313 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 TRIM59Q8IWR1 403 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.87■□□□□ 0.13
CHD3-211ENST00000481999 BACH1O14867 736 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 ERLIN1O75477 346 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 TUBBP07437 444 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 RARRES1P49788 294 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 HERVK_113P62684 666 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 KRT83P78385 493 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 TTLL12Q14166 644 aaPredicted RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 ENOX2Q16206 610 aaKnown RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 MEA1Q16626 185 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 EAPPQ56P03 285 aaPredicted RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 VSIG10LQ86VR7 867 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 FAM178BQ8IXR5 827 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 ZNF526Q8TF50 670 aaPredicted RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 PAGR1Q9BTK6 254 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 KIFC3Q9BVG8 833 aa15.87■□□□□ 0.13
CHD3-211ENST00000481999 NHEJ1Q9H9Q4 299 aaPredicted RBP15.87■□□□□ 0.13
CHD3-211ENST00000481999 LCTP09848 1927 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 ZNF263O14978 683 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 NOL4O94818 638 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 NR3C1P04150 777 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 P4HBP07237 508 aaKnown RBP15.86■□□□□ 0.13
CHD3-211ENST00000481999 YWHABP31946 246 aaKnown RBP15.86■□□□□ 0.13
CHD3-211ENST00000481999 AMPD2Q01433 879 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 SP2Q02086 613 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 NOL9Q5SY16 702 aaKnown RBP15.86■□□□□ 0.13
CHD3-211ENST00000481999 TAF3Q5VWG9 929 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 TCERG1LQ5VWI1 586 aa15.86■□□□□ 0.13
CHD3-211ENST00000481999 RDH13Q8NBN7 331 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms