RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SPATA6Q9NWH7 488 aaPredicted RBP6.69□□□□□ -1.34
VPS50-214ENST00000477935 EFCAB6Q5THR3 1501 aa6.69□□□□□ -1.34
VPS50-214ENST00000477935 PLEKHG1Q9ULL1 1385 aa6.69□□□□□ -1.34
VPS50-214ENST00000477935 CCDC141Q6ZP82 1450 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 BCL9LQ86UU0 1499 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 A0A1B0GTL3 188 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 ESYT3A0FGR9 886 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 GSTA4O15217 222 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 APPP05067 770 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 PDE6AP16499 860 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 ADAM9Q13443 819 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 FBLN7Q53RD9 439 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 LIPIQ6XZB0 460 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 ARHGAP36Q6ZRI8 547 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 MARCH10Q8NA82 808 aaPredicted RBP6.68□□□□□ -1.34
VPS50-214ENST00000477935 RNPC3Q96LT9 517 aaKnown RBP6.68□□□□□ -1.34
VPS50-214ENST00000477935 KRTAP9-9Q9BYP9 154 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 KRTAP9-4Q9BYQ2 154 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 CD244Q9BZW8 370 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 PDGFDQ9GZP0 370 aaPredicted RBP6.68□□□□□ -1.34
VPS50-214ENST00000477935 HSPBP1Q9NZL4 362 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 SRPK3Q9UPE1 567 aa6.68□□□□□ -1.34
VPS50-214ENST00000477935 ZNF561-AS1K7EIQ3 104 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 SMARCA5O60264 1052 aaPredicted RBP6.67□□□□□ -1.34
VPS50-214ENST00000477935 AMY2AP04746 511 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 CKMP06732 381 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 FAHP16930 419 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 AMY2BP19961 511 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 THBS2P35442 1172 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 DNM2P50570 870 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 JAM2P57087 298 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 R3HDM1Q15032 1099 aaKnown RBP6.67□□□□□ -1.34
VPS50-214ENST00000477935 CRY1Q16526 586 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 PAN2Q504Q3 1202 aaKnown RBP6.67□□□□□ -1.34
VPS50-214ENST00000477935 FNDC3BQ53EP0 1204 aaKnown RBP6.67□□□□□ -1.34
VPS50-214ENST00000477935 OSTM1Q86WC4 334 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 TTLL6Q8N841 843 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 CLUHP3Q96NS8 147 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 KCNC2Q96PR1 638 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 RBPJLQ9UBG7 517 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 WASF3Q9UPY6 502 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 COQ6Q9Y2Z9 468 aa6.67□□□□□ -1.34
VPS50-214ENST00000477935 ASXL1Q8IXJ9 1541 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 TCRBV16S1A1N1A0A5B0 115 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 PPP1R12AO14974 1030 aaPredicted RBP6.66□□□□□ -1.34
VPS50-214ENST00000477935 ASMTLO95671 621 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 KRT15P19012 456 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 SLURP1P55000 103 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 FIGNQ5HY92 759 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 TMC5Q6UXY8 1006 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 TTLL7Q6ZT98 887 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 KRT27Q7Z3Y8 459 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 PTRH1Q86Y79 214 aaKnown RBP6.66□□□□□ -1.34
VPS50-214ENST00000477935 UNC5CLQ8IV45 518 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 SP8Q8IXZ3 490 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 NLGN4XQ8N0W4 816 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 ZSWIM3Q96MP5 696 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 CELF4Q9BZC1 486 aaKnown RBP6.66□□□□□ -1.34
VPS50-214ENST00000477935 SMURF1Q9HCE7 757 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 LUC7LQ9NQ29 371 aaKnown RBP6.66□□□□□ -1.34
VPS50-214ENST00000477935 NTMQ9P121 344 aa6.66□□□□□ -1.34
VPS50-214ENST00000477935 MAN2B1O00754 1011 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 INHBBP09529 407 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 RPL13P26373 211 aaKnown RBP6.65□□□□□ -1.34
VPS50-214ENST00000477935 LACTBP83111 547 aaPredicted RBP6.65□□□□□ -1.34
VPS50-214ENST00000477935 ABHD17CQ6PCB6 329 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 PROSER1Q86XN7 944 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 CARFQ8N187 725 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 CISD2Q8N5K1 135 aaKnown RBP6.65□□□□□ -1.34
VPS50-214ENST00000477935 SYT8Q8NBV8 401 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 TMEM209Q96SK2 561 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 SPATA25Q9BR10 227 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 ZCCHC4Q9H5U6 513 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 PARD6AQ9NPB6 346 aa6.65□□□□□ -1.34
VPS50-214ENST00000477935 ACOT7O00154 380 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 KCNK3O14649 394 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 SASH1O94885 1247 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 SARSP49591 514 aaKnown RBP6.64□□□□□ -1.35
VPS50-214ENST00000477935 PRR31Q5SQ13 230 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 BTBD8Q5XKL5 378 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 VASNQ6EMK4 673 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 EP400NLQ6ZTU2 488 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 JAZF1Q86VZ6 243 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 HOMER1Q86YM7 354 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 DDX17Q92841 729 aaKnown RBP6.64□□□□□ -1.35
VPS50-214ENST00000477935 MRPL42Q9Y6G3 142 aaKnown RBP6.64□□□□□ -1.35
VPS50-214ENST00000477935 KANK1Q14678 1352 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 NINLQ9Y2I6 1382 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 MST1RQ04912 1400 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 FYCO1Q9BQS8 1478 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 UNC13BO14795 1591 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 MAST1Q9Y2H9 1570 aa6.64□□□□□ -1.35
VPS50-214ENST00000477935 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.64□□□□□ -1.35
VPS50-214ENST00000477935 CHD2O14647 1828 aaKnown RBP6.64□□□□□ -1.35
VPS50-214ENST00000477935 FAM90A27PA6NNH2 459 aa6.63□□□□□ -1.35
VPS50-214ENST00000477935 PTPN1P18031 435 aaKnown RBP6.63□□□□□ -1.35
VPS50-214ENST00000477935 KCNC1P48547 511 aa6.63□□□□□ -1.35
VPS50-214ENST00000477935 PABPC4Q13310 644 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS50-214ENST00000477935 RTP5Q14D33 572 aa6.63□□□□□ -1.35
VPS50-214ENST00000477935 CD276Q5ZPR3 534 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms