RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.8□□□□□ -0.68
USP39-214ENST00000474572 ARMCX3Q9UH62 379 aaPredicted RBP10.8□□□□□ -0.68
USP39-214ENST00000474572 V9GYY5 206 aaPredicted RBP10.8□□□□□ -0.68
USP39-214ENST00000474572 ATP8B3O60423 1300 aa10.8□□□□□ -0.68
USP39-214ENST00000474572 POLR2AP24928 1970 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 ANO9A1A5B4 782 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 ARHGEF35A5YM69 484 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 RCCD1A6NED2 376 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 ZBTB39O15060 712 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 MAFGO15525 162 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 TLR2O60603 784 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 AFPP02771 609 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 SERPING1P05155 500 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 EPB41P11171 864 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 LMNB1P20700 586 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 NMT1P30419 496 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 SFNP31947 248 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 QARSP47897 775 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 RARRES1P49788 294 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 JAK3P52333 1124 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 KIF11P52732 1056 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 MCCD1P59942 119 aaPredicted RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 TUBB4BP68371 445 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 KRT76Q01546 638 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 WHAMMP3Q1A5X7 153 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 PAPD7Q5XG87 772 aaKnown RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 FBXO38Q6PIJ6 1188 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 SAMD1Q6SPF0 538 aaPredicted RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 TRAPPC11Q7Z392 1133 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 VSIG10LQ86VR7 867 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 C12orf56Q8IXR9 622 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 MYCT1Q8N699 235 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 BANK1Q8NDB2 785 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 UBXN4Q92575 508 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 ZKSCAN4Q969J2 545 aaPredicted RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 SLC35C1Q96A29 364 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 CCDC42Q96M95 316 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 INPP4AQ96PE3 977 aaPredicted RBP10.79□□□□□ -0.68
USP39-214ENST00000474572 PICK1Q9NRD5 415 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 AIPL1Q9NZN9 384 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 TRIM10Q9UDY6 481 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 MYO6Q9UM54 1294 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 AFG3L2Q9Y4W6 797 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 RIPK3Q9Y572 518 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 ZHX2Q9Y6X8 837 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 SIP14410 1827 aa10.79□□□□□ -0.68
USP39-214ENST00000474572 HIP1RO75146 1068 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 IPO7O95373 1038 aaKnown RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 PLEKP08567 350 aaPredicted RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 EIF2AK2P19525 551 aaKnown RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 CCND2P30279 289 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 EIF4A3P38919 411 aaKnown RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 KCNA1Q09470 495 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 BAATQ14032 418 aaPredicted RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 COG2Q14746 738 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 SUPT20HL1Q3ZLR7 823 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 CCDC122Q5T0U0 273 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 ZNF746Q6NUN9 644 aaPredicted RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 RRAGAQ7L523 313 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 CACNA2D4Q7Z3S7 1137 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 KIAA1328Q86T90 577 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 FAM178BQ8IXR5 827 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 GPR161Q8N6U8 529 aaKnown RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 GOLGA5Q8TBA6 731 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 RABGGTAQ92696 567 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 GOLGA1Q92805 767 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 RMDN3Q96TC7 470 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 LACRTQ9GZZ8 138 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 SIX2Q9NPC8 291 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 ANKEF1Q9NU02 776 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 FAM53CQ9NYF3 392 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 GUCA1BQ9UMX6 200 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 DAAM1Q9Y4D1 1078 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 CTDP1Q9Y5B0 961 aaPredicted RBP10.78□□□□□ -0.68
USP39-214ENST00000474572 PCDHB13Q9Y5F0 798 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 NFASCO94856 1347 aa10.78□□□□□ -0.68
USP39-214ENST00000474572 DOCK5Q9H7D0 1870 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 SPDYE16A6NNV3 312 aaPredicted RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 SFI1A8K8P3 1242 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 WDR64B1ANS9 1081 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 DDX39AO00148 427 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 ATP9AO75110 1047 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 USP2O75604 605 aaPredicted RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 STAM2O75886 525 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 CCNE2O96020 404 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 XRCC5P13010 732 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 PSMC2P35998 433 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 PRKCIP41743 596 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 EPS15P42566 896 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 CASP4P49662 377 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 HMGCS2P54868 508 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 POLR2FP61218 127 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 PSMC5P62195 406 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 KIF5AQ12840 1032 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 TMEM132BQ14DG7 1078 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 PPP2R5AQ15172 486 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 SPA17Q15506 151 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 SLC9C1Q4G0N8 1177 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 ZC2HC1CQ53FD0 456 aaPredicted RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 SFMBT2Q5VUG0 894 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms