RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 PDXDC2PQ6P474 469 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 BLOC1S2Q6QNY1 142 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 SLC24A5Q71RS6 500 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 CCDC60Q8IWA6 550 aaPredicted RBP15.37■□□□□ 0.05
CHD3-209ENST00000473376 FAM167AQ96KS9 214 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 TCEANC2Q96MN5 208 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 POP1Q99575 1024 aaKnown RBP15.37■□□□□ 0.05
CHD3-209ENST00000473376 ZNF577Q9BSK1 485 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 C22orf23Q9BZE7 217 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 UPF3BQ9BZI7 483 aaKnown RBP15.37■□□□□ 0.05
CHD3-209ENST00000473376 ELAC1Q9H777 363 aaKnown RBP15.37■□□□□ 0.05
CHD3-209ENST00000473376 ERVK-5Q9HDB9 667 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 CD320Q9NPF0 282 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 RGS18Q9NS28 235 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 TMEM260Q9NX78 707 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 TCEAL9Q9UHQ7 104 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 HCN4Q9Y3Q4 1203 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 PCDHA10Q9Y5I2 948 aa15.37■□□□□ 0.05
CHD3-209ENST00000473376 PRR33A8MZF0 331 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 ZBTB42B2RXF5 422 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 PSAPP07602 524 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 IFNAR1P17181 557 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 LTBRP36941 435 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 CRYBB1P53674 252 aaPredicted RBP15.36■□□□□ 0.05
CHD3-209ENST00000473376 FAM189BP81408 668 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 AKAP17AQ02040 695 aaKnown RBP15.36■□□□□ 0.05
CHD3-209ENST00000473376 SMAD2Q15796 467 aaKnown RBP15.36■□□□□ 0.05
CHD3-209ENST00000473376 PDE12Q6L8Q7 609 aaKnown RBP15.36■□□□□ 0.05
CHD3-209ENST00000473376 SWSAP1Q6NVH7 229 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 ADHFE1Q8IWW8 467 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 SPPL3Q8TCT6 385 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 RSPH1Q8WYR4 309 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 PGBD1Q96JS3 809 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 RIT2Q99578 217 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 TMX1Q9H3N1 280 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 AAASQ9NRG9 546 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 CLDND1Q9NY35 253 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 PCDHB7Q9Y5E2 793 aa15.36■□□□□ 0.05
CHD3-209ENST00000473376 RPS6KA5O75582 802 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 C22orf31O95567 290 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 IL9P15248 144 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 ATP4AP20648 1035 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 RPS6KB1P23443 525 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 CDC42EP1Q00587 391 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 ZP2Q05996 745 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 HYAL1Q12794 435 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 ADAM15Q13444 863 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 CAMK1Q14012 370 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 NTRK3Q16288 839 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 JAKMIP3Q5VZ66 844 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 Q6ZUG5 572 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 TRAPPC12Q8WVT3 735 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 BRF1Q92994 677 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 FAM122AQ96E09 287 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 C11orf16Q9NQ32 467 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 LRFN2Q9ULH4 789 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 SNX14Q9Y5W7 946 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 MRPL42Q9Y6G3 142 aaKnown RBP15.35■□□□□ 0.05
CHD3-209ENST00000473376 NLRC5Q86WI3 1866 aa15.35■□□□□ 0.05
CHD3-209ENST00000473376 WDR64B1ANS9 1081 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 C9IYK1 514 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 H3BQ06 376 aaPredicted RBP15.34■□□□□ 0.05
CHD3-209ENST00000473376 EYA4O95677 639 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 TMOD1P28289 359 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 SFNP31947 248 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 APOBRQ0VD83 1088 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 SMAD4Q13485 552 aaKnown RBP15.34■□□□□ 0.05
CHD3-209ENST00000473376 EFHBQ8N7U6 833 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 RDM1Q8NG50 284 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 KHSRPQ92945 711 aaKnown RBP eCLIP15.34■□□□□ 0.05
CHD3-209ENST00000473376 JAKMIP1Q96N16 626 aaKnown RBP15.34■□□□□ 0.05
CHD3-209ENST00000473376 KCNH6Q9H252 994 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 TMEM161AQ9NX61 479 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 PCDHB12Q9Y5F1 795 aa15.34■□□□□ 0.05
CHD3-209ENST00000473376 DENND3A2RUS2 1198 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 HOXA2O43364 376 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 DCXO43602 365 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 GPR32O75388 356 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 ITGB1P05556 798 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 SSTR3P32745 418 aaPredicted RBP15.33■□□□□ 0.04
CHD3-209ENST00000473376 TMEM62Q0P6H9 643 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 NFX1Q12986 1120 aaKnown RBP15.33■□□□□ 0.04
CHD3-209ENST00000473376 GALNT17Q6IS24 598 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 CKAP2LQ8IYA6 745 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 LENG9Q96B70 501 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 ZBTB10Q96DT7 871 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 CDCA3Q99618 268 aaPredicted RBP15.33■□□□□ 0.04
CHD3-209ENST00000473376 NRBP2Q9NSY0 501 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 ST3GAL5Q9UNP4 418 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 LZTS1Q9Y250 596 aa15.33■□□□□ 0.04
CHD3-209ENST00000473376 NOC2LQ9Y3T9 749 aaKnown RBP15.33■□□□□ 0.04
CHD3-209ENST00000473376 CARNS1A5YM72 827 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 MBTPS2O43462 519 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 JAK3P52333 1124 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 COASYQ13057 564 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 DSC3Q14574 896 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 PRR16Q569H4 304 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 MOXD1Q6UVY6 613 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 LINC01465Q8N7H1 131 aa15.32■□□□□ 0.04
CHD3-209ENST00000473376 KLHL23Q8NBE8 558 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms