RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 NEK5Q6P3R8 708 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 DSTYKQ6XUX3 929 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 RBBP8NLQ8NC74 664 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MRPL1Q9BYD6 325 aaKnown RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 RAB20Q9NX57 234 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 BACH1O14867 736 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MYL6BP14649 208 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 PFKFB1P16118 471 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 NFKBIAP25963 317 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 AARSP49588 968 aaKnown RBP eCLIP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 CASP5P51878 434 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 UNC45BQ8IWX7 931 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 FNBP1Q96RU3 617 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 RHOBTB2Q9BYZ6 727 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 KIF17Q9P2E2 1029 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 FAM153AQ9UHL3 310 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 NOTOA8MTQ0 251 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 PDZK1P1A8MUH7 402 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 AREL1O15033 823 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 TBC1D12O60347 775 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 GYS1P13807 737 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 ARID5BQ14865 1188 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 CCDC142Q17RM4 750 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MCMDC2Q4G0Z9 681 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 ARHGEF25Q86VW2 580 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 SYTL5Q8TDW5 730 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 GIPC3Q8TF64 312 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 CNNM2Q9H8M5 875 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 BAZ1AQ9NRL2 1556 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 TULP2O00295 520 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CDC27P30260 824 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 BNC1Q01954 994 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 OASLQ15646 514 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ZNF618Q5T7W0 954 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 WLSQ5T9L3 541 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 C16orf62Q7Z3J2 963 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ZNF555Q8NEP9 628 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 KCTD4Q8WVF5 259 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 PPP2R3CQ969Q6 453 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 OTULINQ96BN8 352 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 HMG20AQ9NP66 347 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CABP5Q9NP86 173 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 STOML2Q9UJZ1 356 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 HPCAL4Q9UM19 191 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CCDC78A2IDD5 438 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 EVPLLA8MZ36 301 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 SCNN1BP51168 640 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ABATP80404 500 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 THOC5Q13769 683 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 WDR44Q5JSH3 913 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 PRR23BQ6ZRT6 265 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 MICALL2Q8IY33 904 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 SCAIQ8N9R8 606 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 MYCBPAPQ8TBZ2 947 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 HNRNPLLQ8WVV9 542 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 RMDN1Q96DB5 314 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 TEX13AQ9BXU3 409 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 MAP3K20Q9NYL2 800 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 FHOD1Q9Y613 1164 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 WDR97A6NE52 1622 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 MTRF1O75570 445 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 EPN2O95208 641 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CCDC166P0CW27 439 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 PLS3P13797 630 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 PSMC3P17980 439 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 GNAQP50148 359 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ACAP2Q15057 778 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 C11orf57Q6ZUT1 292 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 DCLK2Q8N568 766 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 JDP2Q8WYK2 163 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 SLC39A3Q9BRY0 314 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 DNAAF2Q9NVR5 837 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 USP27XA6NNY8 438 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 PODXLO00592 558 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 FSBPO95073 299 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CPA1P15085 419 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 SNAP25P60880 206 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ITGADQ13349 1161 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ACAD11Q709F0 780 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 KRT27Q7Z3Y8 459 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CYGBQ8WWM9 190 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 POMGNT1Q8WZA1 660 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 VMP1Q96GC9 406 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 THTPAQ9BU02 230 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 LSM14BQ9BX40 385 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 DCTPP1Q9H773 170 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 ZBTB40Q9NUA8 1239 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 SELENONQ9NZV5 590 aa9.59□□□□□ -0.87
COL6A3-210ENST00000473258 CDV3Q9UKY7 258 aaKnown RBP9.59□□□□□ -0.87
COL6A3-210ENST00000473258 LINC00854A0A1B0GVQ3 168 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 RGS5O15539 181 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 PJA2O43164 708 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 CLASP2O75122 1294 aaKnown RBP9.58□□□□□ -0.88
COL6A3-210ENST00000473258 JAK1P23458 1154 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 PSMC6P62333 389 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 KDSRQ06136 332 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 BNIP1Q12981 228 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 MTA1Q13330 715 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 MAPK11Q15759 364 aa9.58□□□□□ -0.88
COL6A3-210ENST00000473258 LAYNQ6UX15 382 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms