RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SGPP1	Q9BX95	441 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	WNT8A	Q9H1J5	351 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	MS4A5	Q9H3V2	200 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	SLC39A2	Q9NP94	309 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	C14orf119	Q9NWQ9	140 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	UCKL1	Q9NWZ5	548 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	KCNG1	Q9UIX4	513 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	FAN1	Q9Y2M0	1017 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	WASHC2A	Q641Q2	1341 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	ELL2	O00472	640 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	PRPF6	O94906	941 aa	Known RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	IL18BP	O95998	194 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TMEM253	P0C7T8	217 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	ECE1	P42892	770 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	NEK2	P51955	445 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	EPHB1	P54762	984 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	MANF	P55145	182 aa	Known RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	HTRA3	P83110	453 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	CAP1	Q01518	475 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	ROM1	Q03395	351 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TTF1	Q15361	905 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	FSCN1	Q16658	493 aa	Known RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	ODR4	Q5SWX8	454 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TIGD7	Q6NT04	549 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TMC5	Q6UXY8	1006 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	CXXC5	Q7LFL8	322 aa	Known RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	CXorf67	Q86X51	503 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TMEFF1	Q8IYR6	380 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TTLL6	Q8N841	843 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	ERCC4	Q92889	916 aa	Predicted RBP	5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	FAM84A	Q96KN4	292 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	SIGLEC10	Q96LC7	697 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TUBGCP5	Q96RT8	1024 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	SLC13A1	Q9BZW2	595 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	SEMA4A	Q9H3S1	761 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	ARHGAP20	Q9P2F6	1191 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	TNKS	O95271	1327 aa		5.2	□□□□□ -1.58
PTCD3-209	ENST00000472044	SHTN1	A0MZ66	631 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	LCHN	A4D1U4	455 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	GOLGA8A	A7E2F4	631 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	GOLGA8B	A8MQT2	603 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	ETV2	O00321	342 aa	Predicted RBP	5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	CFB	P00751	764 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	CHGB	P05060	677 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	GPR3	P46089	330 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	SLC6A3	Q01959	620 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	MCL1	Q07820	350 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	MYBPC3	Q14896	1274 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	KANK2	Q63ZY3	851 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	SLFN12L	Q6IEE8	588 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	KIAA1841	Q6NSI8	718 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	DPP8	Q6V1X1	898 aa	Predicted RBP	5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	CMIP	Q8IY22	773 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	C1orf162	Q8NEQ5	155 aa	Predicted RBP	5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	CHMP4C	Q96CF2	233 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	CLIC6	Q96NY7	704 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	NOX5	Q96PH1	765 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	SYT3	Q9BQG1	590 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	OR10A5	Q9H207	317 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	POFUT1	Q9H488	388 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	KCND1	Q9NSA2	647 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	KLHL42	Q9P2K6	505 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	THRAP3	Q9Y2W1	955 aa	Known RBP	5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	NUMBL	Q9Y6R0	609 aa		5.19	□□□□□ -1.58
PTCD3-209	ENST00000472044	FZD9	O00144	591 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	CYP7B1	O75881	506 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	KRT1	P04264	644 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	RBP3	P10745	1247 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	ENPP1	P22413	925 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	APEX1	P27695	318 aa	Known RBP	5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	RGS3	P49796	1198 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	BCAR1	P56945	870 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	SCAND1	P57086	179 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	ADCY2	Q08462	1091 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	RTP5	Q14D33	572 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	PRR31	Q5SQ13	230 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	ZBTB41	Q5SVQ8	909 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	FAM129C	Q86XR2	697 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	KRTAP1-3	Q8IUG1	177 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	RSAD2	Q8WXG1	361 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	FUBP3	Q96I24	572 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	FAXDC2	Q96IV6	333 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	MYL10	Q9BUA6	226 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	PITHD1	Q9GZP4	211 aa	Predicted RBP	5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	ZFP69B	Q9UJL9	534 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	TMPRSS11E	Q9UL52	423 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	DENND2A	Q9ULE3	1009 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	PPP2R3B	Q9Y5P8	575 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	IRAK3	Q9Y616	596 aa		5.18	□□□□□ -1.58
PTCD3-209	ENST00000472044	E2F8	A0AVK6	867 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PRSS38	A1L453	326 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	MAFG	O15525	162 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	FARP2	O94887	1054 aa	Predicted RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PLA2G1B	P04054	148 aa	Known RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PFKM	P08237	780 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	IARS	P41252	1262 aa	Known RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	IL13RA1	P78552	427 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	NFATC3	Q12968	1075 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PRAMEF9	Q5VWM5	478 aa		5.17	□□□□□ -1.58

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