RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IFIH1Q9BYX4 1025 aaKnown RBP5.84□□□□□ -1.48
SYNE1-220ENST00000471834 NOD2Q9HC29 1040 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 PCDHA4Q9UN74 947 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 KIAA0754O94854 1291 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 LINGO3P0C6S8 592 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 LCORLQ8N3X6 602 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 DHRS4Q9BTZ2 278 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 MMRN2Q9H8L6 949 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 TRPC6Q9Y210 931 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 UNC5CO95185 931 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ATP6V1G2O95670 118 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 RFC4P35249 363 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ZC3H6P61129 1189 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 CYP27A1Q02318 531 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 TMEM67Q5HYA8 995 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 SH2D5Q6ZV89 423 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 BZW1Q7L1Q6 419 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC82Q8N4S0 544 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 SEC16BQ96JE7 1060 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC42Q96M95 316 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 HINFPQ9BQA5 517 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 UBAC1Q9BSL1 405 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 UBA5Q9GZZ9 404 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 CCDC113Q9H0I3 377 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 EML1O00423 815 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 C1QAP02745 245 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 GZMAP12544 262 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 IDEP14735 1019 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 GM2AP17900 193 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 YY1P25490 414 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ADSSP30520 456 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 EIF4A3P38919 411 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 EIF6P56537 245 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 APBB1IPQ7Z5R6 666 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 OR6Y1Q8NGX8 325 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 HPS3Q969F9 1004 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 NACAP1Q9BZK3 213 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 DCP1AQ9NPI6 582 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 EMILIN3Q9NT22 766 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 EHD2Q9NZN4 543 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ODF2LQ9ULJ1 636 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 MYH7P12883 1935 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 F8W8V4 182 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 P4HA2O15460 535 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 USO1O60763 962 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 KRT2P35908 639 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 CTSWP56202 376 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 TBC1D25Q3MII6 688 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 C8orf74Q6P047 294 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 RAPGEF5Q92565 580 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 LNPEPQ9UIQ6 1025 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 PDXKO00764 312 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 RAD51CO43502 376 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF862O60290 1169 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 PEX11AO75192 247 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 APBA3O96018 575 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 SERPING1P05155 500 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 BRD2P25440 801 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 TNNC1P63316 161 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 GSTA3Q16772 222 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 FKBP15Q5T1M5 1219 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 KRT25Q7Z3Z0 450 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 MAATS1Q7Z4T9 603 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 MFN1Q8IWA4 741 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 HOMEZQ8IX15 550 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 BLIDQ8IZY5 108 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ZNF513Q8N8E2 541 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 GRAMD1AQ96CP6 724 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 NOX5Q96PH1 765 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ADAM22Q9P0K1 906 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ZNHIT2Q9UHR6 403 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 LRRC53A6NM62 1247 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 STXBP3O00186 592 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 GGPS1O95749 300 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 MRPS35P82673 323 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 C12orf60Q5U649 245 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 IQCA1Q86XH1 822 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 NELFCDQ8IXH7 590 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 RNF25Q96BH1 459 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 NSUN4Q96CB9 384 aaKnown RBP5.83□□□□□ -1.48
SYNE1-220ENST00000471834 ERP44Q9BS26 406 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 KCNJ14Q9UNX9 436 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 AGAP1Q9UPQ3 857 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 NOD1Q9Y239 953 aa5.83□□□□□ -1.48
SYNE1-220ENST00000471834 KLRG2A4D1S0 409 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 VEGFAP15692 232 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-220ENST00000471834 TSHRP16473 764 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 ITGA6P23229 1130 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CTNNA2P26232 953 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 SLC39A6Q13433 755 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 MPP2Q14168 576 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 EPHA7Q15375 998 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 VWA3BQ502W6 1294 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 IRGCQ6NXR0 463 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 MZB1Q8WU39 189 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 CKAP2Q8WWK9 683 aa5.82□□□□□ -1.48
SYNE1-220ENST00000471834 KANSL3Q9P2N6 904 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms