RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 XRCC6P12956 609 aaKnown RBP eCLIP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MUTP22033 750 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MARCKSP29966 332 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 CDC25AP30304 524 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 CCT6AP40227 531 aaKnown RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MDM2Q00987 491 aaPredicted RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 TRIM71Q2Q1W2 868 aaKnown RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MTERF2Q49AM1 385 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MFSD5Q6N075 450 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 RUFY4Q6ZNE9 571 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 RPAINQ86UA6 219 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 LINC00301Q8NCQ3 95 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 SNX29Q8TEQ0 813 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 ZBTB10Q96DT7 871 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 CEP170P1Q96L14 293 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 AK8Q96MA6 479 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 CEP89Q96ST8 783 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 TSHZ2Q9NRE2 1034 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 RBM19Q9Y4C8 960 aaKnown RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 ATP6V1DQ9Y5K8 247 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 SRPRBQ9Y5M8 271 aaKnown RBP13.37□□□□□ -0.27
VPS13D-204ENST00000469054 SMIM35A0A1B0GVV1 85 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 CAND2O75155 1236 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 C22orf31O95567 290 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 RPLP2P05387 115 aaKnown RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 IQCF3P0C7M6 154 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 LONP1P36776 959 aaKnown RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 THPOP40225 353 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 CCL23P55773 120 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 NPEPPSP55786 919 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 DNM1Q05193 864 aaKnown RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 GRIN1Q05586 938 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 TBC1D8BQ0IIM8 1120 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 STK38Q15208 465 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 ZNF618Q5T7W0 954 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 PLA2G4FQ68DD2 849 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 RSPH3Q86UC2 560 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 TMEM199Q8N511 208 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 DNAJB3Q8WWF6 145 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 NACC1Q96RE7 527 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 SH2D3AQ9BRG2 576 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 MMTAG2Q9BU76 263 aaKnown RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 WNT8AQ9H1J5 351 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 CYP26B1Q9NR63 512 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 ANKEF1Q9NU02 776 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 FBXO2Q9UK22 296 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-204ENST00000469054 CFAP45Q9UL16 551 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 PPME1Q9Y570 386 aa13.36□□□□□ -0.27
VPS13D-204ENST00000469054 ALPK3Q96L96 1907 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 A0A087WWV3 80 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 SPTLC2O15270 562 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 PPP6R2O75170 966 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 YEATS4O95619 227 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 SELPP16109 830 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 ECM1Q16610 540 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 XKR9Q5GH70 373 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 PRPF38BQ5VTL8 546 aaKnown RBP13.35□□□□□ -0.27
VPS13D-204ENST00000469054 EFCAB12Q6NXP0 572 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 TRAF7Q6Q0C0 670 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 POTEGQ6S5H5 508 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 LRRC8DQ7L1W4 858 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 KIAA0319LQ8IZA0 1049 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 NME8Q8N427 588 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 METTL13Q8N6R0 699 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 KRI1Q8N9T8 703 aaKnown RBP13.35□□□□□ -0.27
VPS13D-204ENST00000469054 ZNF579Q8NAF0 562 aaKnown RBP13.35□□□□□ -0.27
VPS13D-204ENST00000469054 PIGOQ8TEQ8 1089 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 SCLYQ96I15 445 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 GDF15Q99988 308 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 FAM49AQ9H0Q0 323 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-204ENST00000469054 KIAA1024Q9UPX6 916 aa13.35□□□□□ -0.27
VPS13D-204ENST00000469054 IGKV6-21A0A0C4DH24 114 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 RSPH10B2B2RC85 870 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 MAFO75444 373 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 PARNO95453 639 aaKnown RBP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 RSPH10BP0C881 870 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 CSF2RAP15509 400 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 TMOD1P28289 359 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 UBA7P41226 1012 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 RARRES1P49788 294 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 FPGSQ05932 587 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 PPIGQ13427 754 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 FAM26DQ5JW98 314 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 HYIQ5T013 277 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 EXOC8Q8IYI6 725 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 LINC01465Q8N7H1 131 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 CLIC6Q96NY7 704 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 JPH2Q9BR39 696 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 CSRNP2Q9H175 543 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 DHX33Q9H6R0 707 aaKnown RBP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 SUGCTQ9HAC7 445 aa13.34□□□□□ -0.27
VPS13D-204ENST00000469054 CIZ1Q9ULV3 898 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-204ENST00000469054 SLC26A4O43511 780 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 CTSHP09668 335 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 RFC2P35250 354 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 RFC5P40937 340 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 CLCN3P51790 818 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 KRT85P78386 507 aa13.33□□□□□ -0.28
VPS13D-204ENST00000469054 GPNMBQ14956 572 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms