RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 USP17L2Q6R6M4 530 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 CCNI2Q6ZMN8 369 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 LRRC8DQ7L1W4 858 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 RAB44Q7Z6P3 723 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 MSL3Q8N5Y2 521 aaKnown RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 ACSF2Q96CM8 615 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 IL17RAQ96F46 866 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 WBP1Q96G27 269 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 PHACTR3Q96KR7 559 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 EDEM2Q9BV94 578 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 FZD8Q9H461 694 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 SMOC1Q9H4F8 434 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 IGSF9Q9P2J2 1179 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 DBR1Q9UK59 544 aaKnown RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 PRR12Q9ULL5 1215 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 NID2Q14112 1375 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 CCDC168Q8NDH2 2452 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 NBEAL2Q6ZNJ1 2754 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 SPAARA0A1B0GVQ0 90 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 MMP3P08254 477 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 WEE2P0C1S8 567 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 FLNAP21333 2647 aaKnown RBP6.29□□□□□ -1.4
HMGB1-207ENST00000468384 MAGEA9P43362 315 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 GYG1P46976 350 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 SRSF5Q13243 272 aaKnown RBP6.29□□□□□ -1.4
HMGB1-207ENST00000468384 FAM47CQ5HY64 1035 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 GPR155Q7Z3F1 870 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 KRT25Q7Z3Z0 450 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 POF1BQ8WVV4 589 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 P2RX5Q93086 422 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 ZNF837Q96EG3 531 aaPredicted RBP6.29□□□□□ -1.4
HMGB1-207ENST00000468384 MMP19Q99542 508 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 IDI2Q9BXS1 227 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 SUGT1Q9Y2Z0 365 aa6.29□□□□□ -1.4
HMGB1-207ENST00000468384 MTF2Q9Y483 593 aaPredicted RBP6.29□□□□□ -1.4
HMGB1-207ENST00000468384 PCNX2A6NKB5 2137 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 KANSL1LA0AUZ9 987 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 PIK3CDO00329 1044 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 FRAT2O75474 233 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-207ENST00000468384 GRM5P41594 1212 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 CTSOP43234 321 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-207ENST00000468384 NFE2L2Q16236 605 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 TCEAL6Q6IPX3 200 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 LLGL2Q6P1M3 1020 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 RUFY4Q6ZNE9 571 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 RETREG3Q86VR2 466 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 TICAM1Q8IUC6 712 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 CAGE1Q8TC20 777 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 MICAL1Q8TDZ2 1067 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 PNISRQ8TF01 805 aaKnown RBP6.28□□□□□ -1.4
HMGB1-207ENST00000468384 RSAD2Q8WXG1 361 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 TCEAL3Q969E4 200 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 SHDQ96IW2 340 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 CDK15Q96Q40 435 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 IFIH1Q9BYX4 1025 aaKnown RBP6.28□□□□□ -1.4
HMGB1-207ENST00000468384 IQSEC3Q9UPP2 1182 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-207ENST00000468384 NOD1Q9Y239 953 aa6.28□□□□□ -1.4
HMGB1-207ENST00000468384 MROH7-TTC4A0A0A0MT08 1334 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 CLEC18AA5D8T8 446 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 FAM170BA6NMN3 283 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 DIAPH2O60879 1101 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 ASNSP08243 561 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 ADCY1Q08828 1119 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 NR1H3Q13133 447 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 PLS1Q14651 629 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 NONOQ15233 471 aaKnown RBP eCLIP6.27□□□□□ -1.41
HMGB1-207ENST00000468384 NAALADL2Q58DX5 795 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 MAMDC4Q6UXC1 1216 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 CLEC18BQ6UXF7 455 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 NOL8Q76FK4 1167 aaKnown RBP6.27□□□□□ -1.41
HMGB1-207ENST00000468384 OTOP3Q7RTS5 596 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 SLC44A3Q8N4M1 653 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 ZNF511Q8NB15 262 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 CLEC18CQ8NCF0 446 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 PNMA1Q8ND90 353 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 LOXL4Q96JB6 756 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 C12orf42Q96LP6 360 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 OSBPL6Q9BZF3 934 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 AP5M1Q9H0R1 490 aa6.27□□□□□ -1.41
HMGB1-207ENST00000468384 GNEQ9Y223 722 aaKnown RBP6.27□□□□□ -1.41
HMGB1-207ENST00000468384 SPINT1O43278 529 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 EPN2O95208 641 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 FBXO45P0C2W1 286 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 KRT10P13645 584 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 PTGS1P23219 599 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 CNR2P34972 360 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 CYP4F3Q08477 520 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 MTAPQ13126 283 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 ELOAQ14241 798 aaKnown RBP6.26□□□□□ -1.41
HMGB1-207ENST00000468384 UBXN2BQ14CS0 331 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 TMEM164Q5U3C3 297 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 DESI1Q6ICB0 168 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 SLC4A10Q6U841 1118 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 CEP68Q76N32 757 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 TLK2Q86UE8 772 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 MORC1Q86VD1 984 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 SRRM1Q8IYB3 904 aaKnown RBP6.26□□□□□ -1.41
HMGB1-207ENST00000468384 RASGRP4Q8TDF6 673 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 STK32AQ8WU08 396 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 PPP1R13LQ8WUF5 828 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms