RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 LRRC71Q8N4P6 559 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 C4orf32Q8N8J7 132 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 BMP2KQ9NSY1 1161 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 WRAP73Q9P2S5 460 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 CEP131Q9UPN4 1083 aa13.49□□□□□ -0.25
SHROOM3-202ENST00000466541 COL1A2P08123 1366 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 DKC1O60832 514 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 SLITRK3O94933 977 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 CHRNA1P02708 482 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 VTNP04004 478 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 RFC2P35250 354 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 MRPS6P82932 125 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ORC2Q13416 577 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 MBTPS1Q14703 1052 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ZRSR1Q15695 479 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 EFCAB12Q6NXP0 572 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 TRAF7Q6Q0C0 670 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 DTHD1Q6ZMT9 781 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ANO5Q75V66 913 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ZNF579Q8NAF0 562 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ERMNQ8TAM6 284 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ZNF668Q96K58 619 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 CEP170P1Q96L14 293 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 OSBPL7Q9BZF2 842 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 ZSWIM4Q9H7M6 989 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 CXXC1Q9P0U4 656 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 LRWD1Q9UFC0 647 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 MTMR6Q9Y217 621 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 AKT3Q9Y243 479 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 CDY2AQ9Y6F7 541 aa13.48□□□□□ -0.25
SHROOM3-202ENST00000466541 VWA3AA6NCI4 1184 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 PP2D1A8MPX8 630 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 STBD1O95210 358 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 GHRP10912 638 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 ACTN1P12814 892 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 YWHABP31946 246 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 CCT6AP40227 531 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 RESTQ13127 1097 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 BECN1Q14457 450 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 GPNMBQ14956 572 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 XKR9Q5GH70 373 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 IER5Q5VY09 327 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 KIAA0319LQ8IZA0 1049 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 PIGOQ8TEQ8 1089 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 VWCEQ96DN2 955 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 CCDC43Q96MW1 224 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 NIFKQ9BYG3 293 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 CLIC4Q9Y696 253 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 SIP14410 1827 aa13.47□□□□□ -0.25
SHROOM3-202ENST00000466541 SMIM35A0A1B0GVV1 85 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 A0A1W2PPC1 479 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 GRXCR1A8MXD5 290 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 SOX1O00570 391 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 MAGEB2O15479 319 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 CAND2O75155 1236 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 MED24O75448 989 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 SLC34A2O95436 690 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 IBSPP21815 317 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 TMOD1P28289 359 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 CDC25AP30304 524 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 RBL2Q08999 1139 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 SF3A1Q15459 793 aaKnown RBP13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 IL17AQ16552 155 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 KIZQ2M2Z5 673 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 TCTN1Q2MV58 587 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 POTEGQ6S5H5 508 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 OTUD6AQ7L8S5 288 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 C4orf19Q8IY42 314 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 HERVK_113Q902F9 699 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 LRCH3Q96II8 777 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 SCLT1Q96NL6 688 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 MAP7D2Q96T17 732 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 HSD17B14Q9BPX1 270 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 MTIF3Q9H2K0 278 aaKnown RBP13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 CYP26B1Q9NR63 512 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 DAXXQ9UER7 740 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 TRPV2Q9Y5S1 764 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 SLC4A7Q9Y6M7 1214 aa13.46□□□□□ -0.25
SHROOM3-202ENST00000466541 ARID2Q68CP9 1835 aa13.46□□□□□ -0.26
SHROOM3-202ENST00000466541 LAD1O00515 517 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 PARNO95453 639 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 PFKMP08237 780 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 FXR2P51116 673 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 POLGP54098 1239 aaPredicted RBP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 DRP2Q13474 957 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 PKP1Q13835 747 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 TARBP2Q15633 366 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 FAM109BQ6ICB4 259 aaPredicted RBP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 CATSPER3Q86XQ3 398 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 NME8Q8N427 588 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 DBF4BQ8NFT6 615 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 NEK9Q8TD19 979 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 SNX29Q8TEQ0 813 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 SEPT8Q92599 483 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 PLIN2Q99541 437 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 CELF4Q9BZC1 486 aaKnown RBP13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 RAB34Q9BZG1 259 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 CDHR5Q9HBB8 845 aa13.45□□□□□ -0.26
SHROOM3-202ENST00000466541 MYH15Q9Y2K3 1946 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms