RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ORC2Q13416 577 aaPredicted RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 FOXD4L6Q3SYB3 417 aaPredicted RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 XKR3Q5GH77 459 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 HABP4Q5JVS0 413 aaKnown RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 FOXD4L3Q6VB84 417 aaPredicted RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 ANO5Q75V66 913 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 BRAPQ7Z569 592 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 LRRC71Q8N4P6 559 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 METTL13Q8N6R0 699 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 TNPO1Q92973 898 aaKnown RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 ZNF668Q96K58 619 aaPredicted RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 HSD17B14Q9BPX1 270 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 SUGCTQ9HAC7 445 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 BMP2KQ9NSY1 1161 aaPredicted RBP13.08□□□□□ -0.32
CUX1-207ENST00000465461 CLIC4Q9Y696 253 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 TANC1Q9C0D5 1861 aa13.08□□□□□ -0.32
CUX1-207ENST00000465461 COL1A2P08123 1366 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 FGBP02675 491 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 SPATA31C1P0DKV0 1188 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 CDC25AP30304 524 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 CLCN3P51790 818 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 MGAT3Q09327 533 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 DRP2Q13474 957 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 SF3A1Q15459 793 aaKnown RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 TARBP2Q15633 366 aaKnown RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 ECM1Q16610 540 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 EFCAB12Q6NXP0 572 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 TAF2Q6P1X5 1199 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 CATSPER3Q86XQ3 398 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 RPUSD2Q8IZ73 545 aaKnown RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 KIAA0319LQ8IZA0 1049 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 FAM167AQ96KS9 214 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 RNPC3Q96LT9 517 aaKnown RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 CEP89Q96ST8 783 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 NIFKQ9BYG3 293 aaKnown RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 CDHR5Q9HBB8 845 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 CXXC1Q9P0U4 656 aaPredicted RBP13.07□□□□□ -0.32
CUX1-207ENST00000465461 CDY2AQ9Y6F7 541 aa13.07□□□□□ -0.32
CUX1-207ENST00000465461 EVPLQ92817 2033 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 TET1Q8NFU7 2136 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 SMIM35A0A1B0GVV1 85 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 SOX1O00570 391 aaPredicted RBP13.06□□□□□ -0.32
CUX1-207ENST00000465461 VTNP04004 478 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 YWHABP31946 246 aaKnown RBP13.06□□□□□ -0.32
CUX1-207ENST00000465461 FXR2P51116 673 aaKnown RBP eCLIP13.06□□□□□ -0.32
CUX1-207ENST00000465461 ATP2C1P98194 919 aaPredicted RBP13.06□□□□□ -0.32
CUX1-207ENST00000465461 GRIN1Q05586 938 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 TMEM266Q2M3C6 531 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 DTHD1Q6ZMT9 781 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 C4orf19Q8IY42 314 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 PIGOQ8TEQ8 1089 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 CEP170P1Q96L14 293 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 ZSWIM4Q9H7M6 989 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 CYP26B1Q9NR63 512 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 LRWD1Q9UFC0 647 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 CEP131Q9UPN4 1083 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 GINS2Q9Y248 185 aa13.06□□□□□ -0.32
CUX1-207ENST00000465461 SIP14410 1827 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 VWA3AA6NCI4 1184 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 ZBBXA8MT70 800 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 GRXCR1A8MXD5 290 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 GHRP10912 638 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 RFC2P35250 354 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 MRPS6P82932 125 aaKnown RBP13.05□□□□□ -0.32
CUX1-207ENST00000465461 TBC1D8BQ0IIM8 1120 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
CUX1-207ENST00000465461 XKR9Q5GH70 373 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 FAM26DQ5JW98 314 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 FAM109BQ6ICB4 259 aaPredicted RBP13.05□□□□□ -0.32
CUX1-207ENST00000465461 POTEGQ6S5H5 508 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 RSPH3Q86UC2 560 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 LRCH3Q96II8 777 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 PLIN2Q99541 437 aa13.05□□□□□ -0.32
CUX1-207ENST00000465461 DAXXQ9UER7 740 aaPredicted RBP13.05□□□□□ -0.32
CUX1-207ENST00000465461 LAD1O00515 517 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 MAGEB2O15479 319 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 DKC1O60832 514 aaKnown RBP eCLIP13.04□□□□□ -0.32
CUX1-207ENST00000465461 CXCL10P02778 98 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 ZSCAN22P10073 491 aaPredicted RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 MARCKSP29966 332 aaPredicted RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 CCT6AP40227 531 aaKnown RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 PRPHP41219 470 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 LPIN1Q14693 890 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 ZRSR1Q15695 479 aaKnown RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 KIZQ2M2Z5 673 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 PSRC1Q6PGN9 363 aaPredicted RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 TMCO2Q7Z6W1 182 aaPredicted RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 RPAINQ86UA6 219 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 LINC01465Q8N7H1 131 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 IGSF22Q8N9C0 903 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 DBF4BQ8NFT6 615 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 SNX29Q8TEQ0 813 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 HERVK_113Q902F9 699 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 CHAMP1Q96JM3 812 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 USP28Q96RU2 1077 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 CELF4Q9BZC1 486 aaKnown RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 TFIP11Q9UBB9 837 aaKnown RBP13.04□□□□□ -0.32
CUX1-207ENST00000465461 AKT3Q9Y243 479 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 TRPV2Q9Y5S1 764 aa13.04□□□□□ -0.32
CUX1-207ENST00000465461 CAND2O75155 1236 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms