RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	MTMR3	Q13615	1198 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	GABPB2	Q8TAK5	448 aa	Predicted RBP	12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	PIGO	Q8TEQ8	1089 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	GRK7	Q8WTQ7	553 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	SREK1	Q8WXA9	508 aa	Known RBP	12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	MSTO1	Q9BUK6	570 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	CARD6	Q9BX69	1037 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	SMARCAD1	Q9H4L7	1026 aa		12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	TOPORS	Q9NS56	1045 aa	Predicted RBP	12.79	□□□□□ -0.36
RBM39-223	ENST00000463004	AK9	Q5TCS8	1911 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	EIF3CL	B5ME19	914 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	GFPT2	O94808	682 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	MXD4	Q14582	209 aa	Predicted RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	C9orf131	Q5VYM1	1079 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	GPRC5A	Q8NFJ5	357 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	EIF3C	Q99613	913 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	KCNQ5	Q9NR82	932 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	MYPN	Q86TC9	1320 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	WNT10B	O00744	389 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	TSNARE1	Q96NA8	513 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	MRPL4	Q9BYD3	311 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	RIOK3	O14730	519 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	IVL	P07476	585 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	IGBP1	P78318	339 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	LRMP	Q12912	555 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	IQCB1	Q15051	598 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	SWSAP1	Q6NVH7	229 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	BANK1	Q8NDB2	785 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	SCFD2	Q8WU76	684 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	CDC23	Q9UJX2	597 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	CLIC2	O15247	247 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	RPLP2	P05387	115 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	PRR29	P0C7W0	189 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	TBXAS1	P24557	533 aa	Predicted RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	DHX40	Q8IX18	779 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	MTMR14	Q8NCE2	650 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	PPP1R13B	Q96KQ4	1090 aa		12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	MOV10L1	Q9BXT6	1211 aa	Known RBP	12.78	□□□□□ -0.36
RBM39-223	ENST00000463004	LAMB4	A4D0S4	1761 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	NDUFA10	O95299	355 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	ZSCAN20	P17040	1043 aa	Predicted RBP	12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	YWHAB	P31946	246 aa	Known RBP	12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	EPHX2	P34913	555 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	STAT5B	P51692	787 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	CACNB1	Q02641	598 aa	Predicted RBP	12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	SREBF2	Q12772	1141 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	RHOT2	Q8IXI1	618 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	BBOF1	Q8ND07	529 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	DNER	Q8NFT8	737 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	KATNAL1	Q9BW62	490 aa		12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	DIS3	Q9Y2L1	958 aa	Known RBP	12.77	□□□□□ -0.36
RBM39-223	ENST00000463004	SPDYE4	A6NLX3	237 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	CLDN3	O15551	220 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	PDZD4	Q76G19	769 aa	Predicted RBP	12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	NLRP7	Q8WX94	980 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	CAMKK2	Q96RR4	588 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	GH1	P01241	217 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	ATP1A3	P13637	1013 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	CLEC10A	Q8IUN9	316 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	ZFYVE28	Q9HCC9	887 aa		12.77	□□□□□ -0.37
RBM39-223	ENST00000463004	FAM205C	A6NFA0	338 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	P4HA2	O15460	535 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	GJC1	P36383	396 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	LMNB2	Q03252	620 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	DAAM2	Q86T65	1068 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004		V9GYY5	206 aa	Predicted RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	PCNX4	Q63HM2	1172 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	HAUS6	Q7Z4H7	955 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	SYT2	Q8N9I0	419 aa	Predicted RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	ACER1	Q8TDN7	264 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	ZC3H15	Q8WU90	426 aa	Known RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	HAUS1	Q96CS2	278 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	ATG4C	Q96DT6	458 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	PBK	Q96KB5	322 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	FAM193B	Q96PV7	902 aa	Predicted RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	CCDC113	Q9H0I3	377 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	DDX4	Q9NQI0	724 aa	Known RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	STIM2	Q9P246	746 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	JRKL	Q9Y4A0	524 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	PCDHB4	Q9Y5E5	795 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	ATP8B3	O60423	1300 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004		A0A1B0GTH6	734 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	DENND3	A2RUS2	1198 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	SPATA33	Q96N06	139 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	WDR18	Q9BV38	432 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	RAB20	Q9NX57	234 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	NID2	Q14112	1375 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	PP2D1	A8MPX8	630 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	RNF8	O76064	485 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	PLS3	P13797	630 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	SLC26A2	P50443	739 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	MYBPC2	Q14324	1141 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	RNF10	Q8N5U6	811 aa	Known RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	NSRP1	Q9H0G5	558 aa	Known RBP	12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	TMEM60	Q9H2L4	133 aa		12.76	□□□□□ -0.37
RBM39-223	ENST00000463004	FAM237A	A0A1B0GTK4	181 aa		12.75	□□□□□ -0.37
RBM39-223	ENST00000463004	MYO1F	O00160	1098 aa		12.75	□□□□□ -0.37
RBM39-223	ENST00000463004	HIP1R	O75146	1068 aa		12.75	□□□□□ -0.37

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