RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 HELBQ8NG08 1087 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 MAGOHBQ96A72 148 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 NT5C1BQ96P26 610 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SERPINB12Q96P63 405 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 VAT1LQ9HCJ6 419 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 CCDC13Q8IYE1 715 aa7.59□□□□□ -1.2
SYNE1-216ENST00000461872 MYCBPAPQ8TBZ2 947 aa7.59□□□□□ -1.2
SYNE1-216ENST00000461872 ACCSQ96QU6 501 aa7.59□□□□□ -1.2
SYNE1-216ENST00000461872 SYNCQ9H7C4 482 aa7.59□□□□□ -1.2
SYNE1-216ENST00000461872 RAB20Q9NX57 234 aa7.59□□□□□ -1.2
SYNE1-216ENST00000461872 NAA30Q147X3 362 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 MICAL1Q8TDZ2 1067 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 N4BP2L2Q92802 583 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 C6orf229H3BNL8 230 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 SEC23AQ15436 765 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 NOA1Q8NC60 698 aaKnown RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CATSPER1Q8NEC5 780 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ARMC2Q8NEN0 867 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 FNBP1Q96RU3 617 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CENPKQ9BS16 269 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 TTC7AQ9ULT0 858 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CCT8L1PA6NM43 557 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 DNAJC8O75937 253 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 MOCS3O95396 460 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 NR3C1P04150 777 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ALDH1B1P30837 517 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CYP27A1Q02318 531 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ATG16L1Q676U5 607 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CC2D2BQ6DHV5 1058 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ZNF473Q8WTR7 871 aaKnown RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ZCCHC17Q9NP64 241 aaKnown RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 HAUS2Q9NVX0 235 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CNGA1P29973 690 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 TXNDC16Q9P2K2 825 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 STRIP2Q9ULQ0 834 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ADCY8P40145 1251 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 GPC5P78333 572 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ASPHQ12797 758 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 HADHQ16836 314 aaKnown RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CENPUQ71F23 418 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 MAP7D3Q8IWC1 876 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 GRAMD1CQ8IYS0 662 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 TEKT3Q9BXF9 490 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 PHF2O75151 1096 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CALB1P05937 261 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CENPCQ03188 943 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 COASYQ13057 564 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 RASA3Q14644 834 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 LRRC31Q6UY01 552 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ATP6V0A1Q93050 837 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 KCTD16Q68DU8 428 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 HIBCHQ6NVY1 386 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 SMYD4Q8IYR2 804 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 USP15Q9Y4E8 981 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 LOC102724428A0A0B4J2F2 783 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 SOX5P35711 763 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 PMS2P54278 862 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 SIK1P57059 783 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 CCDC25Q86WR0 208 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 PRPF38AQ8NAV1 312 aaKnown RBP7.58□□□□□ -1.2
SYNE1-216ENST00000461872 SNF8Q96H20 258 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 AIFM3Q96NN9 605 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 GDF3Q9NR23 364 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 ADAMTS1Q9UHI8 967 aa7.58□□□□□ -1.2
SYNE1-216ENST00000461872 RBAK-RBAKDNI3L0D1 243 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 FGFR2P21802 821 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 JAK3P52333 1124 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 KCNH2Q12809 1159 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MFSD14BQ5SR56 506 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 XRRA1Q6P2D8 792 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 CXorf56Q9H5V9 222 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 CLTAP09496 248 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 PRKCIP41743 596 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 TJP1Q07157 1748 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 DMP1Q13316 513 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 FOXP4Q8IVH2 680 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 SDR42E1Q8WUS8 393 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ATP8A1Q9Y2Q0 1164 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 IQANK1A0A1B0GTG1 560 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 EEF2P13639 858 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 PPP4R1Q8TF05 950 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 LZICQ8WZA0 190 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 LRRC37BQ96QE4 947 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ERP44Q9BS26 406 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 BUB1O43683 1085 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 KIAA1755Q5JYT7 1200 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 C4orf22Q6V702 233 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 NME8Q8N427 588 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 XPO6Q96QU8 1125 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 SAMM50Q9Y512 469 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ZC3H11AO75152 810 aaKnown RBP eCLIP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 PRR29P0C7W0 189 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 TBXAS1P24557 533 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MMP14P50281 582 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 RBM5P52756 815 aaKnown RBP eCLIP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 SGO2Q562F6 1265 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 C12orf60Q5U649 245 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 SLFN12LQ6IEE8 588 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 NFRKBQ6P4R8 1299 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ATXN2LQ8WWM7 1075 aaKnown RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms