RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL3A1-203ENST00000450867 ZSCAN16Q9H4T2 348 aaPredicted RBP16.11■□□□□ 0.17
COL3A1-203ENST00000450867 ZSWIM4Q9H7M6 989 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 FOXD4L1Q9NU39 408 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 KDM3AQ9Y4C1 1321 aa16.11■□□□□ 0.17
COL3A1-203ENST00000450867 IGKV6-21A0A0C4DH24 114 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 RSPH10B2B2RC85 870 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 NBNO60934 754 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 BMP15O95972 392 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 RSPH10BP0C881 870 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 MUTP22033 750 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 SHHQ15465 462 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 TMEM266Q2M3C6 531 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 LRIT3Q3SXY7 679 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 RSPH3Q86UC2 560 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 FERMT3Q86UX7 667 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 NME8Q8N427 588 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 HERVK_113Q902F9 699 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 DYDC2Q96IM9 177 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 POLR3CQ9BUI4 534 aaPredicted RBP16.1■□□□□ 0.17
COL3A1-203ENST00000450867 TUFT1Q9NNX1 390 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 RGL1Q9NZL6 768 aa16.1■□□□□ 0.17
COL3A1-203ENST00000450867 MORC2Q9Y6X9 1032 aaPredicted RBP16.1■□□□□ 0.17
COL3A1-203ENST00000450867 HSP90AA1P07900 732 aaKnown RBP16.09■□□□□ 0.17
COL3A1-203ENST00000450867 SPATA31C1P0DKV0 1188 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 MRPS6P82932 125 aaKnown RBP16.09■□□□□ 0.17
COL3A1-203ENST00000450867 ZNF365Q70YC5 407 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 KIAA0319LQ8IZA0 1049 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 DNAJB3Q8WWF6 145 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 ZBTB10Q96DT7 871 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 SQORQ9Y6N5 450 aa16.09■□□□□ 0.17
COL3A1-203ENST00000450867 FGBP02675 491 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 CHRNA1P02708 482 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 ACRP10323 421 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 XRCC6P12956 609 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL3A1-203ENST00000450867 RPA1P27694 616 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 TECP42680 631 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 CYP4A11Q02928 519 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 IL17AQ16552 155 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 FAM43BQ6ZT52 329 aaPredicted RBP16.08■□□□□ 0.16
COL3A1-203ENST00000450867 ZNF710Q8N1W2 664 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 RAB34Q9BZG1 259 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 CYP26B1Q9NR63 512 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 ANKEF1Q9NU02 776 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 SEPT9Q9UHD8 586 aaPredicted RBP16.08■□□□□ 0.16
COL3A1-203ENST00000450867 STK24Q9Y6E0 443 aa16.08■□□□□ 0.16
COL3A1-203ENST00000450867 TMEM150BA6NC51 233 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 DDX11L8A8MPP1 907 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 MAFO75444 373 aaPredicted RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 BAIAP3O94812 1187 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 YWHABP31946 246 aaKnown RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 TBC1D8BQ0IIM8 1120 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 MKRN4PQ13434 485 aaPredicted RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 CTTNQ14247 550 aaKnown RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 PLEKHG4Q58EX7 1191 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 IER5Q5VY09 327 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 HAUS3Q68CZ6 603 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 CNKSR3Q6P9H4 555 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 DTHD1Q6ZMT9 781 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 CATSPER3Q86XQ3 398 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 EXOC8Q8IYI6 725 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 ERMNQ8TAM6 284 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 FAM49AQ9H0Q0 323 aaPredicted RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 DHX33Q9H6R0 707 aaKnown RBP16.07■□□□□ 0.16
COL3A1-203ENST00000450867 LRWD1Q9UFC0 647 aa16.07■□□□□ 0.16
COL3A1-203ENST00000450867 MED24O75448 989 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 CTSHP09668 335 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 ZSCAN22P10073 491 aaPredicted RBP16.06■□□□□ 0.16
COL3A1-203ENST00000450867 RFC5P40937 340 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 BECN1Q14457 450 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 PTPAQ15257 358 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 MTERF2Q49AM1 385 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 FBXO47Q5MNV8 452 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 OTUD6AQ7L8S5 288 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 DEFB128Q7Z7B8 93 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 TPH2Q8IWU9 490 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 USP38Q8NB14 1042 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 RNPC3Q96LT9 517 aaKnown RBP16.06■□□□□ 0.16
COL3A1-203ENST00000450867 JPH2Q9BR39 696 aaPredicted RBP16.06■□□□□ 0.16
COL3A1-203ENST00000450867 MTIF3Q9H2K0 278 aaKnown RBP16.06■□□□□ 0.16
COL3A1-203ENST00000450867 TRPV2Q9Y5S1 764 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 CDY2AQ9Y6F7 541 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 TTC3P53804 2025 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 TCHHQ07283 1943 aa16.06■□□□□ 0.16
COL3A1-203ENST00000450867 GAS2O43903 313 aaKnown RBP16.05■□□□□ 0.16
COL3A1-203ENST00000450867 ACTN1P12814 892 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 TMOD1P28289 359 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 NPEPPSP55786 919 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 LPIN1Q14693 890 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 SF3A1Q15459 793 aaKnown RBP16.05■□□□□ 0.16
COL3A1-203ENST00000450867 HYIQ5T013 277 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 PLA2G4FQ68DD2 849 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 EFCAB12Q6NXP0 572 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 TRMT1LQ7Z2T5 733 aaKnown RBP16.05■□□□□ 0.16
COL3A1-203ENST00000450867 KCTD17Q8N5Z5 321 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 ZNF579Q8NAF0 562 aaKnown RBP16.05■□□□□ 0.16
COL3A1-203ENST00000450867 AK8Q96MA6 479 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 CELF4Q9BZC1 486 aaKnown RBP16.05■□□□□ 0.16
COL3A1-203ENST00000450867 OSBPL7Q9BZF2 842 aa16.05■□□□□ 0.16
COL3A1-203ENST00000450867 DBR1Q9UK59 544 aaKnown RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms