RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 RANBP17Q9H2T7 1088 aaKnown RBP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 AJAP1Q9UKB5 411 aaPredicted RBP17.54■□□□□ 0.4
SHQ1-202ENST00000444040 A0A0U1RQG5 324 aaPredicted RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 SPDYE2BA6NHP3 402 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 SPDYE6P0CI01 402 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 JAM2P57087 298 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 GBP6Q6ZN66 633 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 GOLGA5Q8TBA6 731 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 FIZ1Q96SL8 496 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 IKZF4Q9H2S9 585 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 NENFQ9UMX5 172 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 GCOM1H8Y6P7 765 aaPredicted RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 PPIP5K2O43314 1243 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 POLR2MP0CAP2 368 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 CAPN2P17655 700 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 NMT1P30419 496 aaKnown RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 NFIL3Q16649 462 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 TCERG1LQ5VWI1 586 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 C8orf74Q6P047 294 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 SND1Q7KZF4 910 aaKnown RBP eCLIP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 INPP4AQ96PE3 977 aaPredicted RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 NAGPAQ9UK23 515 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 GTPBP10A4D1E9 387 aaKnown RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 CCDC174Q6PII3 467 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 GOPCQ9HD26 462 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 ZBTB21Q9ULJ3 1066 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 PACSIN2Q9UNF0 486 aaPredicted RBP17.53■□□□□ 0.4
SHQ1-202ENST00000444040 PCDHB13Q9Y5F0 798 aa17.53■□□□□ 0.4
SHQ1-202ENST00000444040 CLRN2A0PK11 232 aa17.52■□□□□ 0.4
SHQ1-202ENST00000444040 CHMP2AO43633 222 aa17.52■□□□□ 0.4
SHQ1-202ENST00000444040 FAM13AO94988 1023 aa17.52■□□□□ 0.4
SHQ1-202ENST00000444040 FAM151AQ8WW52 585 aa17.52■□□□□ 0.4
SHQ1-202ENST00000444040 WRAP73Q9P2S5 460 aaPredicted RBP17.52■□□□□ 0.4
SHQ1-202ENST00000444040 KIF13BQ9NQT8 1826 aa17.52■□□□□ 0.4
SHQ1-202ENST00000444040 VIL1P09327 827 aaKnown RBP17.52■□□□□ 0.39
SHQ1-202ENST00000444040 PRELPP51888 382 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 EPHB4P54760 987 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 UBXN2AP68543 259 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 CEP55Q53EZ4 464 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 ZC2HC1CQ53FD0 456 aaPredicted RBP17.52■□□□□ 0.39
SHQ1-202ENST00000444040 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.52■□□□□ 0.39
SHQ1-202ENST00000444040 MYCT1Q8N699 235 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 SUPT20HQ8NEM7 779 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 TMOD2Q9NZR1 351 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 GCNT4Q9P109 453 aa17.52■□□□□ 0.39
SHQ1-202ENST00000444040 RPS6KA5O75582 802 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 MUTP22033 750 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 ZNF131P52739 623 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 ALKBH5Q6P6C2 394 aaKnown RBP17.51■□□□□ 0.39
SHQ1-202ENST00000444040 EMBQ6PCB8 327 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 B3GNT9Q6UX72 402 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 PARVGQ9HBI0 331 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 ZNF70Q9UC06 446 aaPredicted RBP17.51■□□□□ 0.39
SHQ1-202ENST00000444040 FRMPD4Q14CM0 1322 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 CNTNAP1P78357 1384 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 GOLGA6BA6NDN3 693 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 GLI1P08151 1106 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 ANXA13P27216 316 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 AFAP1L1Q8TED9 768 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 CHURC1Q8WUH1 139 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 CAVIN3Q969G5 261 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 GDF3Q9NR23 364 aa17.51■□□□□ 0.39
SHQ1-202ENST00000444040 RBBP6Q7Z6E9 1792 aaKnown RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 SHTN1A0MZ66 631 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 PSMC2P35998 433 aaKnown RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 DNA2P51530 1060 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 RSBN1LQ6PCB5 846 aaPredicted RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 GJB7Q6PEY0 223 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 ZNF720Q7Z2F6 126 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 VCPKMTQ9H867 229 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 MRPL11Q9Y3B7 192 aaKnown RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 ATP8B3O60423 1300 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 PLA2G6O60733 806 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 GAS7O60861 476 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 ARP10275 920 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 DNAAF5Q86Y56 855 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 FAM186BQ8IYM0 893 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 LRRC57Q8N9N7 239 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 ZFP91Q96JP5 570 aaPredicted RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 GMLQ99445 158 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 MKNK1Q9BUB5 465 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 UNC45AQ9H3U1 944 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.5■□□□□ 0.39
SHQ1-202ENST00000444040 SEL1LQ9UBV2 794 aa17.5■□□□□ 0.39
SHQ1-202ENST00000444040 CES2O00748 559 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 COG2Q14746 738 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 KSR1Q8IVT5 923 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 TMEM59LQ9UK28 342 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 C21orf2O43822 256 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 FLOT1O75955 427 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 TSEN2Q8NCE0 465 aaKnown RBP17.49■□□□□ 0.39
SHQ1-202ENST00000444040 OLIG1Q8TAK6 271 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 NACC1Q96RE7 527 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 SH3GL2Q99962 352 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 ZNF577Q9BSK1 485 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 DMAC2Q9NW81 257 aa17.49■□□□□ 0.39
SHQ1-202ENST00000444040 ZBTB48P10074 688 aaPredicted RBP17.48■□□□□ 0.39
SHQ1-202ENST00000444040 LEKR1Q6ZMV7 388 aa17.48■□□□□ 0.39
SHQ1-202ENST00000444040 CDAN1Q8IWY9 1227 aa17.48■□□□□ 0.39
SHQ1-202ENST00000444040 USP38Q8NB14 1042 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms