RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 A0A1W2PQJ5 194 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 K7ENM7 598 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 DHX15O43143 795 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 USO1O60763 962 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 HIP1RO75146 1068 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 TGFB3P10600 412 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 KRT13P13646 458 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 YWHABP31946 246 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 ZBED6P86452 979 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 ARID5BQ14865 1188 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 SYCP1Q15431 976 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 NFIL3Q16649 462 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 XKR3Q5GH77 459 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CACNA2D4Q7Z3S7 1137 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 SCFD1Q8WVM8 642 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 MKNK1Q9BUB5 465 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 GBP3Q9H0R5 595 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 C17orf75Q9HAS0 396 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 SLC5A4Q9NY91 659 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 DAAM1Q9Y4D1 1078 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PRPF6O94906 941 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 SUPT20HL2P0C7V6 817 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 ERCC3P19447 782 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CASP14P31944 242 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 ZNF131P52739 623 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CETN1Q12798 172 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CEP135Q66GS9 1140 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 USP37Q86T82 979 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 IRF2BP1Q8IU81 584 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 TC2NQ8N9U0 490 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 GPRC5AQ8NFJ5 357 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 WNK4Q96J92 1243 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PARK7Q99497 189 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 MMRN2Q9H8L6 949 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 BTBD7Q9P203 1132 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 GABBR1Q9UBS5 961 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CCL15-CCL14A0A0B4J2E2 113 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 NR3C1P04150 777 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PLS3P13797 630 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PSMC2P35998 433 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 RARRES1P49788 294 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 ADKP55263 362 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 MARSP56192 900 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 KRT83P78385 493 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PPP2R5AQ15172 486 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CCL15Q16663 113 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 ZCWPW2Q504Y3 356 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 LRRC55Q6ZSA7 311 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 EPM2AIP1Q7L775 607 aaPredicted RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 ANKRD23Q86SG2 305 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CNKSR2Q8WXI2 1034 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 CEP170P1Q96L14 293 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 JPH2Q9BR39 696 aaPredicted RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 TMX1Q9H3N1 280 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 AZI2Q9H6S1 392 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 TRMT1Q9NXH9 659 aaKnown RBP6.63□□□□□ -1.35
VPS50-205ENST00000441602 CAPN11Q9UMQ6 739 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 PCDHA2Q9Y5H9 948 aa6.63□□□□□ -1.35
VPS50-205ENST00000441602 LOXHD1Q8IVV2 1947 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 PHLPP2Q6ZVD8 1323 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 N4BP1O75113 896 aaKnown RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 DGAT1O75907 488 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 XRCC5P13010 732 aaKnown RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 KCNA2P16389 499 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ACTR2P61160 394 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 DMP1Q13316 513 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 SEPT14Q6ZU15 432 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 C16orf45Q96MC5 204 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 MLXIPQ9HAP2 919 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ATP6V0A4Q9HBG4 840 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ZNF302Q9NR11 478 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 PAPPA2Q9BXP8 1791 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 WDR90Q96KV7 1748 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 AFPP02771 609 aaKnown RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 MYBP10242 640 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ARHGAP29Q52LW3 1261 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 FAM102BQ5T8I3 360 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 TCERG1LQ5VWI1 586 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 MAP1SQ66K74 1059 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 MOB2Q70IA6 237 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ZC3H3Q8IXZ2 948 aaKnown RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 FAM186BQ8IYM0 893 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 C17orf53Q8N3J3 647 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 FAM133AQ8N9E0 248 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ZNF592Q92610 1267 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 VTI1AQ96AJ9 217 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 KCTD10Q9H3F6 313 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ABHD10Q9NUJ1 306 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 SEPT9Q9UHD8 586 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 NOP56O00567 594 aaKnown RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 KIF5CO60282 957 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 GYPCP04921 128 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ZBTB48P10074 688 aaPredicted RBP6.62□□□□□ -1.35
VPS50-205ENST00000441602 RFC5P40937 340 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ERVK-9P63128 1117 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ERVK-24P63145 666 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 SP4Q02446 784 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 SPA17Q15506 151 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 SWSAP1Q6NVH7 229 aa6.62□□□□□ -1.35
VPS50-205ENST00000441602 ZNF720Q7Z2F6 126 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms