RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MUC3AQ02505 3323 aa8.87□□□□□ -0.99
VPS50-204ENST00000438395 BAZ2BQ9UIF8 2168 aaKnown RBP8.86□□□□□ -0.99
VPS50-204ENST00000438395 PIEZO1Q92508 2521 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 RRN3P2A6NIE6 340 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 MAFGO15525 162 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 HOXA2O43364 376 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 KCNA2P16389 499 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 ITGB5P18084 799 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 ZNF76P36508 570 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 MRPS6P82932 125 aaKnown RBP8.86□□□□□ -0.99
VPS50-204ENST00000438395 RTN1Q16799 776 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 FAM26DQ5JW98 314 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 TMEM31Q5JXX7 168 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 IER5Q5VY09 327 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 TEX2Q8IWB9 1127 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 TMEM192Q8IY95 271 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 FIBCD1Q8N539 461 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 BANK1Q8NDB2 785 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 TOP1MTQ969P6 601 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 PPP2R3CQ969Q6 453 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 LRRC2Q9BYS8 371 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 LSG1Q9H089 658 aaKnown RBP8.86□□□□□ -0.99
VPS50-204ENST00000438395 FAM49AQ9H0Q0 323 aaPredicted RBP8.86□□□□□ -0.99
VPS50-204ENST00000438395 GLT8D2Q9H1C3 349 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 SLC9A2Q9UBY0 812 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 PCDHA6Q9UN73 950 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 PCDHA8Q9Y5H6 950 aa8.86□□□□□ -0.99
VPS50-204ENST00000438395 ADGRA3Q8IWK6 1321 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 GOLGA8AA7E2F4 631 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 GOLGA8BA8MQT2 603 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 H3BNC9 293 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 hCG_1984214I3L0E3 225 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 BACH1O14867 736 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 ZBTB43O43298 467 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 FOSP01100 380 aaPredicted RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 BTG3Q14201 252 aaPredicted RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 KRT32Q14532 448 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 LEXMQ3ZCV2 418 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 BMP2KLQ5H9B9 411 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 PTCRAQ6ISU1 281 aaPredicted RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 APOA5Q6Q788 366 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 RUFY4Q6ZNE9 571 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 TSHZ1Q6ZSZ6 1077 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 RPAINQ86UA6 219 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 SGMS1Q86VZ5 419 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 ZNF713Q8N859 430 aaPredicted RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 FAM122AQ96E09 287 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 NEK1Q96PY6 1258 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 NSUN3Q9H649 340 aaKnown RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 JADE2Q9NQC1 790 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 UBIAD1Q9Y5Z9 338 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 CDY2AQ9Y6F7 541 aa8.85□□□□□ -0.99
VPS50-204ENST00000438395 COL4A4P53420 1690 aaPredicted RBP8.85□□□□□ -0.99
VPS50-204ENST00000438395 TRIP12Q14669 1992 aaPredicted RBP8.84□□□□□ -0.99
VPS50-204ENST00000438395 CCDC196A0A1B0GTZ2 297 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.84□□□□□ -0.99
VPS50-204ENST00000438395 NCK2O43639 380 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 ATP9AO75110 1047 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 CSPG5O95196 566 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 CHRNA1P02708 482 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 HMGB1P09429 215 aaKnown RBP8.84□□□□□ -0.99
VPS50-204ENST00000438395 STAG3L1P0CL83 205 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 INSRRP14616 1297 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 IBSPP21815 317 aaPredicted RBP8.84□□□□□ -0.99
VPS50-204ENST00000438395 FOXC1Q12948 553 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 PAK2Q13177 524 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 AP3B2Q13367 1082 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 LPIN1Q14693 890 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 CSPP1Q1MSJ5 1256 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 FBXO47Q5MNV8 452 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 FAM160B1Q5W0V3 765 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 WWC2Q6AWC2 1192 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 GJD3Q8N144 294 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 CCDC12Q8WUD4 166 aaPredicted RBP8.84□□□□□ -0.99
VPS50-204ENST00000438395 DNAJB3Q8WWF6 145 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 MXRA8Q9BRK3 442 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 FTHL17Q9BXU8 183 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 ANO3Q9BYT9 981 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 LMAN2LQ9H0V9 348 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 RIC8AQ9NPQ8 531 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 KCNH7Q9NS40 1196 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 LRFN2Q9ULH4 789 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 TRPV2Q9Y5S1 764 aa8.84□□□□□ -0.99
VPS50-204ENST00000438395 CNTNAP5Q8WYK1 1306 aa8.83□□□□□ -1
VPS50-204ENST00000438395 XIRP2A4UGR9 3374 aa8.83□□□□□ -1
VPS50-204ENST00000438395 KLF18A0A0U1RQI7 1052 aa8.83□□□□□ -1
VPS50-204ENST00000438395 GSTTP1A0A1W2PQM5 241 aa8.83□□□□□ -1
VPS50-204ENST00000438395 MBLAC1A4D2B0 266 aaPredicted RBP8.83□□□□□ -1
VPS50-204ENST00000438395 H3BQ06 376 aaPredicted RBP8.83□□□□□ -1
VPS50-204ENST00000438395 DDX39AO00148 427 aaKnown RBP8.83□□□□□ -1
VPS50-204ENST00000438395 GDF9O60383 454 aa8.83□□□□□ -1
VPS50-204ENST00000438395 CDC45O75419 566 aa8.83□□□□□ -1
VPS50-204ENST00000438395 RB1P06400 928 aa8.83□□□□□ -1
VPS50-204ENST00000438395 CD52P31358 61 aa8.83□□□□□ -1
VPS50-204ENST00000438395 SLC26A2P50443 739 aa8.83□□□□□ -1
VPS50-204ENST00000438395 STAT5BP51692 787 aa8.83□□□□□ -1
VPS50-204ENST00000438395 ACTR2P61160 394 aa8.83□□□□□ -1
VPS50-204ENST00000438395 ADAM17P78536 824 aa8.83□□□□□ -1
VPS50-204ENST00000438395 AKAP17AQ02040 695 aaKnown RBP8.83□□□□□ -1
VPS50-204ENST00000438395 NECTIN1Q15223 517 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms