RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CTTNQ14247 550 aaKnown RBP12.91□□□□□ -0.34
CD44-209ENST00000433892 C10orf76Q5T2E6 689 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 GBP6Q6ZN66 633 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 SH2D3CQ8N5H7 860 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 GMCL1P1Q8NEA9 526 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 GMCL1Q96IK5 515 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 SIX2Q9NPC8 291 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 ZBTB39O15060 712 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 CHMP2AO43633 222 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 CEP104O60308 925 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 KIF4AO95239 1232 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 CIITAP33076 1130 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 KCTD19Q17RG1 926 aaPredicted RBP12.91□□□□□ -0.34
CD44-209ENST00000433892 BMT2Q1RMZ1 405 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 CFAP58Q5T655 872 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 MCTP2Q6DN12 878 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 RINT1Q6NUQ1 792 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 IQCKQ8N0W5 287 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 LRRC57Q8N9N7 239 aa12.91□□□□□ -0.34
CD44-209ENST00000433892 ZNF622Q969S3 477 aaKnown RBP eCLIP12.91□□□□□ -0.34
CD44-209ENST00000433892 METTL14Q9HCE5 456 aaKnown RBP12.91□□□□□ -0.34
CD44-209ENST00000433892 A0A1W2PRG0 241 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 ZNF233A6NK53 670 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 TGFB1I1O43294 461 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 FLOT1O75955 427 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 EYA4O95677 639 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 NMT1P30419 496 aaKnown RBP12.9□□□□□ -0.34
CD44-209ENST00000433892 PRKCIP41743 596 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 GNGT1P63211 74 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 TNNC1P63316 161 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 ZC2HC1CQ53FD0 456 aaPredicted RBP12.9□□□□□ -0.34
CD44-209ENST00000433892 DACT2Q5SW24 774 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 TPH2Q8IWU9 490 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 POLR3CQ9BUI4 534 aaPredicted RBP12.9□□□□□ -0.34
CD44-209ENST00000433892 TDRD3Q9H7E2 651 aaKnown RBP12.9□□□□□ -0.34
CD44-209ENST00000433892 ZNF219Q9P2Y4 722 aaPredicted RBP12.9□□□□□ -0.34
CD44-209ENST00000433892 TMEM59LQ9UK28 342 aa12.9□□□□□ -0.34
CD44-209ENST00000433892 SLC16A3O15427 465 aaKnown RBP12.9□□□□□ -0.35
CD44-209ENST00000433892 CCT5P48643 541 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 MMP14P50281 582 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 JAM2P57087 298 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 RRP1BQ14684 758 aaKnown RBP12.9□□□□□ -0.35
CD44-209ENST00000433892 IFI16Q16666 785 aaKnown RBP12.9□□□□□ -0.35
CD44-209ENST00000433892 STRIP1Q5VSL9 837 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 KSR1Q8IVT5 923 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 NLGN1Q8N2Q7 840 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 MYCT1Q8N699 235 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 PROCA1Q8NCQ7 364 aaPredicted RBP12.9□□□□□ -0.35
CD44-209ENST00000433892 TPCN2Q8NHX9 752 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 PIK3R5Q8WYR1 880 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 MASTLQ96GX5 879 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 AP1M1Q9BXS5 423 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 PRR12Q9ULL5 1215 aa12.9□□□□□ -0.35
CD44-209ENST00000433892 GRIN2DO15399 1336 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 SMCHD1A6NHR9 2005 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 IGLV3-22A0A075B6J6 115 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 TMCO5BA8MYB1 307 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 GFPT2O94808 682 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 SLITRK3O94933 977 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 FAM13AO94988 1023 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 CFBP00751 764 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 PDE6BP35913 854 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 BCAS4Q8TDM0 211 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 HSD17B14Q9BPX1 270 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 WDR18Q9BV38 432 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 MRIQ9BWK5 157 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 OLFML3Q9NRN5 406 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 STK24Q9Y6E0 443 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 NRXN2Q9P2S2 1712 aa12.89□□□□□ -0.35
CD44-209ENST00000433892 FAM170AA1A519 330 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 DDX3XO00571 662 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-209ENST00000433892 CES2O00748 559 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 EIF3HO15372 352 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-209ENST00000433892 ECE2O60344 883 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 H2AFZP0C0S5 128 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 ATP1A2P50993 1020 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 UBXN2AP68543 259 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 COG2Q14746 738 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 RBM26Q5T8P6 1007 aaKnown RBP12.88□□□□□ -0.35
CD44-209ENST00000433892 H2AFVQ71UI9 128 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 OTOP1Q7RTM1 612 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 VPS36Q86VN1 386 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 COL23A1Q86Y22 540 aaPredicted RBP12.88□□□□□ -0.35
CD44-209ENST00000433892 FAM186BQ8IYM0 893 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 METTL13Q8N6R0 699 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 U2AF1L4Q8WU68 220 aaKnown RBP12.88□□□□□ -0.35
CD44-209ENST00000433892 BORCS6Q96GS4 357 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 DYDC2Q96IM9 177 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 PBKQ96KB5 322 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 ZMYM2Q9UBW7 1377 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 CYP3A4P08684 503 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 MMP10P09238 476 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 ECE1P42892 770 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 CORO7P57737 925 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 PDCLQ13371 301 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 HLTFQ14527 1009 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-209ENST00000433892 LRCH2Q5VUJ6 765 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 PEX26Q7Z412 305 aa12.88□□□□□ -0.35
CD44-209ENST00000433892 MREGQ8N565 214 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms