RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 HMX2A2RU54 273 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 FAM170BA6NMN3 283 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 MAFKO60675 156 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 CLASP2O75122 1294 aaKnown RBP5.19□□□□□ -1.58
HMGB3-203ENST00000430118 DGKIO75912 1065 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 ITGB2P05107 769 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 PF4V1P10720 104 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 GNAT1P11488 350 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 AKAP5P24588 427 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 CD40P25942 277 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 CC2D1AQ6P1N0 951 aaPredicted RBP5.19□□□□□ -1.58
HMGB3-203ENST00000430118 FRMD7Q6ZUT3 714 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 OTOP3Q7RTS5 596 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 KRT27Q7Z3Y8 459 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 C11orf96Q7Z7L8 435 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 PNMA8AQ86V59 439 aaPredicted RBP5.19□□□□□ -1.58
HMGB3-203ENST00000430118 NLRP10Q86W26 655 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 NME9Q86XW9 330 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 UNC5CLQ8IV45 518 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 NOSTRINQ8IVI9 506 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 AMOTL1Q8IY63 956 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 KIAA1958Q8N8K9 716 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 LMBR1Q8WVP7 490 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 TTC17Q96AE7 1141 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 CHAMP1Q96JM3 812 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 HSPA12BQ96MM6 686 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 PDGFDQ9GZP0 370 aaPredicted RBP5.19□□□□□ -1.58
HMGB3-203ENST00000430118 PCIF1Q9H4Z3 704 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 RRP7BPQ9NSQ0 103 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 MKS1Q9NXB0 559 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 COA3Q9Y2R0 106 aaPredicted RBP5.19□□□□□ -1.58
HMGB3-203ENST00000430118 DAPK1P53355 1430 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 GLI3P10071 1580 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 PITPNM2Q9BZ72 1349 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 ADGRL2O95490 1459 aa5.19□□□□□ -1.58
HMGB3-203ENST00000430118 MYO5BQ9ULV0 1848 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 SLIT2O94813 1529 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 DISP2A7MBM2 1401 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 A0A1W2PQ45 241 aaPredicted RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 A0A1W2PQY0 241 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 KLHL33A6NCF5 533 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 H3BS24 57 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 KRIT1O00522 736 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 MT-CO1P00395 513 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 LTFP02788 710 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 F13BP05160 661 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 GJA4P35212 333 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 FNTBP49356 437 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 R3HDM1Q15032 1099 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 CHRNA2Q15822 529 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 CDKAL1Q5VV42 579 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 PPP4R4Q6NUP7 873 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 PRR23CQ6ZRP0 262 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 CPNE8Q86YQ8 564 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 UHMK1Q8TAS1 419 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 NETO1Q8TDF5 533 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 UBE2Q2Q8WVN8 375 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 UBE2FQ969M7 185 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 SYTL4Q96C24 671 aaPredicted RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 HSPBAP1Q96EW2 488 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 TRMT2BQ96GJ1 504 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 SARGQ9BW04 601 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 ZDHHC5Q9C0B5 715 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 WNT8AQ9H1J5 351 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 VTA1Q9NP79 307 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 SLC6A20Q9NP91 592 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 ZSWIM5Q9P217 1185 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 PPARGC1AQ9UBK2 798 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 FBXL7Q9UJT9 491 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 NOB1Q9ULX3 412 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 SRPK3Q9UPE1 567 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 NOC2LQ9Y3T9 749 aaKnown RBP5.18□□□□□ -1.58
HMGB3-203ENST00000430118 PCDHA11Q9Y5I1 949 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 B3GALT1Q9Y5Z6 326 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 USP32Q8NFA0 1604 aa5.18□□□□□ -1.58
HMGB3-203ENST00000430118 HFM1A2PYH4 1435 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 PTPRUQ92729 1446 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ANO9A1A5B4 782 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 WTIPA6NIX2 430 aaPredicted RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 VSTM5A8MXK1 200 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 PRPF3O43395 683 aaKnown RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 FKTNO75072 461 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ADAM23O75077 832 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 AMY2AP04746 511 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 AMY2BP19961 511 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 LPOP22079 712 aaPredicted RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 SDHAP31040 664 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 KIR2DL1P43626 348 aaPredicted RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 KIR2DL2P43627 348 aaPredicted RBP5.17□□□□□ -1.58
HMGB3-203ENST00000430118 JAM2P57087 298 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 EGR3Q06889 387 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ADCY1Q08828 1119 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 NFIAQ12857 509 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 DUSP4Q13115 394 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 EPHA7Q15375 998 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 EMC4Q5J8M3 183 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 PGM2L1Q6PCE3 622 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 SLC4A10Q6U841 1118 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 ARHGAP36Q6ZRI8 547 aa5.17□□□□□ -1.58
HMGB3-203ENST00000430118 EP400NLQ6ZTU2 488 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms