RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 MICALCLQ6ZW33 695 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 CPNE8Q86YQ8 564 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 CCDC13Q8IYE1 715 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 GRAPLQ8TC17 118 aaPredicted RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 DYDC1Q8WWB3 177 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 CAVIN3Q969G5 261 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 PLCD4Q9BRC7 762 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 ANO3Q9BYT9 981 aa13.59□□□□□ -0.23
CDH3-202ENST00000429102 DHX36Q9H2U1 1008 aaKnown RBP13.59□□□□□ -0.23
CDH3-202ENST00000429102 TTLL1O95922 423 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 CLTAP09496 248 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 PRLRP16471 622 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 FGFR4P22455 802 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 RUSC1Q9BVN2 902 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 DBNDD1Q9H9R9 158 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 CTTNBP2NLQ9P2B4 639 aa13.58□□□□□ -0.23
CDH3-202ENST00000429102 CAND2O75155 1236 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 FAM13AO94988 1023 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 NR3C1P04150 777 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 EPB41P11171 864 aaKnown RBP13.58□□□□□ -0.24
CDH3-202ENST00000429102 RHBDL3P58872 404 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 PPP1R7Q15435 360 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 CCDC174Q6PII3 467 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 ANKRD42Q8N9B4 389 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 HOOK2Q96ED9 719 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 TSKSQ9UJT2 592 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 DBR1Q9UK59 544 aaKnown RBP13.58□□□□□ -0.24
CDH3-202ENST00000429102 AMFRQ9UKV5 643 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 SPATA31A1Q5TZJ5 1347 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 ADAMTSL3P82987 1691 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 GMNCA6NCL1 334 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 SSTR3P32745 418 aaPredicted RBP13.58□□□□□ -0.24
CDH3-202ENST00000429102 ZNF543Q08ER8 600 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 C2CD6Q53TS8 623 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 SLC35G2Q8TBE7 412 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 RAPGEF5Q92565 580 aa13.58□□□□□ -0.24
CDH3-202ENST00000429102 DDX20Q9UHI6 824 aaKnown RBP13.58□□□□□ -0.24
CDH3-202ENST00000429102 PJA2O43164 708 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 PPP1R12BO60237 982 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 EVI5O60447 810 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 TNFAIP3P21580 790 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 STAT1P42224 750 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 ITGB3BPQ13352 177 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 ZKSCAN8Q15776 578 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 ZFYVE27Q5T4F4 411 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 IRF2BP2Q7Z5L9 587 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 TPCN2Q8NHX9 752 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 CTNNBL1Q8WYA6 563 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 PAIP2Q9BPZ3 127 aaKnown RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 ELAC2Q9BQ52 826 aaKnown RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 LRRC27Q9C0I9 530 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 RIOX1Q9H6W3 641 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 TOGARAM1Q9Y4F4 1720 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 DDX3XO00571 662 aaKnown RBP eCLIP13.57□□□□□ -0.24
CDH3-202ENST00000429102 PLCG2P16885 1265 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 CDC25CP30307 473 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 DRAP1Q14919 205 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 SEPT2Q15019 361 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 KNOP1Q1ED39 458 aaKnown RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 KDM7AQ6ZMT4 941 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 EP400NLQ6ZTU2 488 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 WHAMMQ8TF30 809 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 LRRC45Q96CN5 670 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 ARHGEF26Q96DR7 871 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 LBHD1Q9BQE6 289 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 DISP2A7MBM2 1401 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 ZBTB5O15062 677 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 SORBS3O60504 671 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 EEF2P13639 858 aaKnown RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 IFI35P80217 286 aaPredicted RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 ARHGAP4P98171 946 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 SLFN13Q68D06 897 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.57□□□□□ -0.24
CDH3-202ENST00000429102 TACO1Q9BSH4 297 aaKnown RBP13.57□□□□□ -0.24
CDH3-202ENST00000429102 NT5C3AQ9H0P0 336 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 TMBIM4Q9HC24 238 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 KCNK9Q9NPC2 374 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 TBK1Q9UHD2 729 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 DNAJC12Q9UKB3 198 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 IGSF9BQ9UPX0 1349 aa13.57□□□□□ -0.24
CDH3-202ENST00000429102 BCL9LQ86UU0 1499 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 SSR1P43307 286 aaKnown RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 MARCKSL1P49006 195 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 USP11P51784 963 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 PDIA5Q14554 519 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 HIBCHQ6NVY1 386 aaPredicted RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 ZNF662Q6ZS27 426 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 CAPN12Q6ZSI9 719 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 CACNA2D3Q8IZS8 1091 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 C18orf8Q96DM3 657 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 POP1Q99575 1024 aaKnown RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 ZC3H12CQ9C0D7 883 aaKnown RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 THAP2Q9H0W7 228 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 GANQ9H2C0 597 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 AZI2Q9H6S1 392 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 ERVK-5Q9HDB9 667 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.56□□□□□ -0.24
CDH3-202ENST00000429102 GOLGA8IPA6NC78 632 aa13.56□□□□□ -0.24
CDH3-202ENST00000429102 GOLGA8JA6NMD2 632 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms