RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DRC3Q9H069 523 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 KCNJ14Q9UNX9 436 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 PDHA1P08559 390 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 FAM163BP0C2L3 166 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 GRM1Q13255 1194 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 PUS10Q3MIT2 529 aaKnown RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 YTHDF3Q7Z739 585 aaKnown RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 MYOCDQ8IZQ8 938 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 F8VZ95 297 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 FZD9O00144 591 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 DDNO94850 711 aaPredicted RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 MAGEA10P43363 369 aaPredicted RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 VSNL1P62760 191 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 ZNF473Q8WTR7 871 aaKnown RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 PCMTD1Q96MG8 357 aaPredicted RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 POLR3EQ9NVU0 708 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 ELOA2Q8IYF1 753 aaPredicted RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 SPICE1Q8N0Z3 855 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.63□□□□□ -0.71
USP54-205ENST00000424265 NLGN2Q8NFZ4 835 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 GMCL1Q96IK5 515 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 NAP1L3Q99457 506 aaPredicted RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 NAPGQ99747 312 aaPredicted RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 SH3GL1Q99961 368 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 AGXT2Q9BYV1 514 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 BCORQ6W2J9 1755 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ROBO3Q96MS0 1386 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ZNF174Q15697 407 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ACCSLQ4AC99 568 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 FAM83BQ5T0W9 1011 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ZFAND2BQ8WV99 257 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 RTEL1Q9NZ71 1219 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ZNF711Q9Y462 761 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 EVI5O60447 810 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 PPP6R2O75170 966 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 LONP1P36776 959 aaKnown RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 NFIAQ12857 509 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 COG2Q14746 738 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 ZNF394Q53GI3 561 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 MAP3K20Q9NYL2 800 aaKnown RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 CXCL11O14625 94 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 KIF23Q02241 960 aaPredicted RBP10.63□□□□□ -0.71
USP54-205ENST00000424265 SREBF2Q12772 1141 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 LDHDQ86WU2 507 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 WDR11Q9BZH6 1224 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 BARHL2Q9NY43 387 aa10.63□□□□□ -0.71
USP54-205ENST00000424265 NFKBIEO00221 500 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 OR52Z1P0C646 297 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 CCND2P30279 289 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 GTF2A2P52657 109 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 ANTXR2P58335 489 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 ARPC4P59998 168 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 NUGGCQ68CJ6 796 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 MAATS1Q7Z4T9 603 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 RNF10Q8N5U6 811 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 PARK7Q99497 189 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 EPN3Q9H201 632 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 CUEDC2Q9H467 287 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 SPC25Q9HBM1 224 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 LRWD1Q9UFC0 647 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 HPCAL4Q9UM19 191 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 TSC22D4Q9Y3Q8 395 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 ADALQ6DHV7 355 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 FAAH2Q6GMR7 532 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 SND1Q7KZF4 910 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP54-205ENST00000424265 NLRP14Q86W24 1093 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 IFT74Q96LB3 600 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 MYH14Q7Z406 1995 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 UNCXA6NJT0 531 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 MARCKSP29966 332 aaPredicted RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 PDE4DQ08499 809 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 CACNA2D4Q7Z3S7 1137 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 USP37Q86T82 979 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP54-205ENST00000424265 TMX2Q9Y320 296 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 ESYT2A0FGR8 921 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 USO1O60763 962 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 SLC25A27O95847 323 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 NDUFB10O96000 172 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 KRT72Q14CN4 511 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 ARL6IP4Q66PJ3 421 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 THOC7Q6I9Y2 204 aaKnown RBP10.62□□□□□ -0.71
USP54-205ENST00000424265 SV2BQ7L1I2 683 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 GPKOWQ92917 476 aaPredicted RBP eCLIP10.62□□□□□ -0.71
USP54-205ENST00000424265 HVCN1Q96D96 273 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 FAM114A2Q9NRY5 505 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 RREB1Q92766 1687 aa10.62□□□□□ -0.71
USP54-205ENST00000424265 A0A1W2PQ27 194 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 A0A1W2PQ64 194 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 A0A1W2PQD8 194 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 RASSF9O75901 435 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 FGRP09769 529 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 PPP1R15BQ5SWA1 713 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 TMEM154Q6P9G4 183 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 MAP7D3Q8IWC1 876 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 SMC1BQ8NDV3 1235 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 MYCLP12524 364 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 ECE1P42892 770 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 FNTAP49354 379 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 MUM1Q2TAK8 710 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms