RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FGFBP2Q9BYJ0 223 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 ARHGEF3Q9NR81 526 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 BZW2Q9Y6E2 419 aaKnown RBP11.63□□□□□ -0.55
USP54-204ENST00000422491 COL4A1P02462 1669 aa11.63□□□□□ -0.55
USP54-204ENST00000422491 TLDC2A0PJX2 215 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 WTIPA6NIX2 430 aaPredicted RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 SPDYE3A6NKU9 549 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 ACTN1P12814 892 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 PRKCIP41743 596 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 PDE6CP51160 858 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 TFAP4Q01664 338 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 MAP2K1Q02750 393 aaPredicted RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 CNGA2Q16280 664 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 TMEM119Q4V9L6 283 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 ZDHHC24Q6UX98 284 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 PARD3BQ8TEW8 1205 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 NSUN4Q96CB9 384 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 CDK5RAP3Q96JB5 506 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 SLC4A9Q96Q91 983 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 MOV10L1Q9BXT6 1211 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 ATP8A2Q9NTI2 1148 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 GGT7Q9UJ14 662 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 RPTORQ8N122 1335 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 PALM3A6NDB9 673 aaPredicted RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 ENO4A6NNW6 628 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 ADAMTS2O95450 1211 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 LINGO3P0C6S8 592 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 IFNAR2P48551 515 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 NAPAP54920 295 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 COPS2P61201 443 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 DR1Q01658 176 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 SLC29A2Q14542 456 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 UBAP2Q5T6F2 1119 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 DCAF12L1Q5VU92 463 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 ASRGL1Q7L266 308 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 ZC3H3Q8IXZ2 948 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 SYCE1Q8N0S2 351 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 RBM46Q8TBY0 533 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 CRNKL1Q9BZJ0 848 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 ADAM22Q9P0K1 906 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 USP15Q9Y4E8 981 aaPredicted RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 CD2APQ9Y5K6 639 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 SCN7AQ01118 1682 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 SMCO2A6NFE2 343 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 POTEMA6NI47 508 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 FLOT1O75955 427 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 UCHL3P15374 230 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 NPEPPSP55786 919 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 KCNH2Q12809 1159 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 SEPT2Q15019 361 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 FAM26FQ5R3K3 315 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 C6orf118Q5T5N4 469 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 AP1ARQ63HQ0 302 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 KIF2BQ8N4N8 673 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 GBP7Q8N8V2 638 aaPredicted RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 KLHL29Q96CT2 875 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 TMEM109Q9BVC6 243 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 GOPCQ9HD26 462 aa11.62□□□□□ -0.55
USP54-204ENST00000422491 CNOT7Q9UIV1 285 aaKnown RBP11.62□□□□□ -0.55
USP54-204ENST00000422491 SMIM23A6NLE4 172 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ATP2A2P16615 1042 aaKnown RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 MSH2P43246 934 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 CALCRLQ16602 461 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 CCDC152Q4G0S7 254 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 SPDYE1Q8NFV5 336 aaPredicted RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 TBC1D16Q8TBP0 767 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 FBXO25Q8TCJ0 367 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 LRRC27Q9C0I9 530 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 KCTD10Q9H3F6 313 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ERVK-5Q9HDB9 667 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 DAAM1Q9Y4D1 1078 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 PCDHA2Q9Y5H9 948 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 GOLGA6L10A0A0M3HER8 536 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 KIAA0391O15091 583 aaKnown RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 DDX3YO15523 660 aaKnown RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 SLC37A4O43826 429 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 H2AFZP0C0S5 128 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 SLC9A1P19634 815 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ANXA13P27216 316 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 GNA11P29992 359 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 DRG2P55039 364 aaKnown RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 PLTPP55058 493 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ECM1Q16610 540 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 H2AFVQ71UI9 128 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 EPS8L3Q8TE67 593 aaKnown RBP11.61□□□□□ -0.55
USP54-204ENST00000422491 SNX29Q8TEQ0 813 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 GLG1Q92896 1179 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ZBTB10Q96DT7 871 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 ARHGEF10LQ9HCE6 1279 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 C6orf50Q9HD87 102 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 INTUQ9ULD6 942 aa11.61□□□□□ -0.55
USP54-204ENST00000422491 FAM187AA6NFU0 413 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 EDIL3O43854 480 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 LUC7L3O95232 432 aaKnown RBP11.6□□□□□ -0.55
USP54-204ENST00000422491 COPB2P35606 906 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 EPS15P42566 896 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 MECOMQ03112 1051 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 PLS1Q14651 629 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 KIAA1755Q5JYT7 1200 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms