RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 SUCLA2Q9P2R7 463 aaPredicted RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 BAIAP2L1Q9UHR4 511 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 PPP1R12BO60237 982 aaPredicted RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 PPFIA2O75334 1257 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 FGGP02679 453 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 RPSAP08865 295 aaKnown RBP23.15■■□□□ 1.3
USP48-205ENST00000421625 VPS72Q15906 364 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 TLDC1Q6P9B6 456 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 SLC51AQ86UW1 340 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 CCDC65Q8IXS2 484 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 SELENOSQ9BQE4 189 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 TXLNGYQ9BZA5 131 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 EPB41L4BQ9H329 900 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 NOD2Q9HC29 1040 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 KIAA1024Q9UPX6 916 aa23.15■■□□□ 1.3
USP48-205ENST00000421625 LDHBP07195 334 aaKnown RBP23.14■■□□□ 1.3
USP48-205ENST00000421625 PON1P27169 355 aa23.14■■□□□ 1.3
USP48-205ENST00000421625 SLC8A1P32418 973 aa23.14■■□□□ 1.3
USP48-205ENST00000421625 CASP5P51878 434 aa23.14■■□□□ 1.3
USP48-205ENST00000421625 GPBP1Q86WP2 473 aa23.14■■□□□ 1.3
USP48-205ENST00000421625 ZNF652Q9Y2D9 606 aa23.14■■□□□ 1.3
USP48-205ENST00000421625 CETN3O15182 167 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 FLOT1O75955 427 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 MMEP08473 750 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 NT5C2P49902 561 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 SPTY2D1Q68D10 685 aaPredicted RBP23.14■■□□□ 1.29
USP48-205ENST00000421625 GJB7Q6PEY0 223 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 ATP6V0A4Q9HBG4 840 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 DDX25Q9UHL0 483 aaKnown RBP23.14■■□□□ 1.29
USP48-205ENST00000421625 NENFQ9UMX5 172 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 H2AFZP0C0S5 128 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 PLA2G4BP0C869 781 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 CLNS1AP54105 237 aaKnown RBP23.14■■□□□ 1.29
USP48-205ENST00000421625 H2AFVQ71UI9 128 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 ZC3H3Q8IXZ2 948 aaKnown RBP23.14■■□□□ 1.29
USP48-205ENST00000421625 CCDC24Q8N4L8 307 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 MTFR1LQ9H019 292 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 GOPCQ9HD26 462 aa23.14■■□□□ 1.29
USP48-205ENST00000421625 BZW2Q9Y6E2 419 aaKnown RBP23.14■■□□□ 1.29
USP48-205ENST00000421625 NAV1Q8NEY1 1877 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 SMIM23A6NLE4 172 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 MARCH6O60337 910 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 EXOC3L4Q17RC7 722 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 HES6Q96HZ4 224 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 RIOX1Q9H6W3 641 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 OSGEPQ9NPF4 335 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 POTEB3A0JP26 581 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 POTECB2RU33 542 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 DDX3XO00571 662 aaKnown RBP eCLIP23.13■■□□□ 1.299e-15■■■■□ 19.8
USP48-205ENST00000421625 POTEBQ6S5H4 581 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 NEDD1Q8NHV4 660 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 U2AF1L4Q8WU68 220 aaKnown RBP23.13■■□□□ 1.29
USP48-205ENST00000421625 ATXN2LQ8WWM7 1075 aaKnown RBP23.13■■□□□ 1.29
USP48-205ENST00000421625 CENPTQ96BT3 561 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 ADAM7Q9H2U9 754 aa23.13■■□□□ 1.29
USP48-205ENST00000421625 TLDC2A0PJX2 215 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 DCAF17Q5H9S7 520 aaPredicted RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 AFPP02771 609 aaKnown RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 PRKCIP41743 596 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 EIF3BP55884 814 aaKnown RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 PRPF4BQ13523 1007 aaKnown RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 UBAP2Q5T6F2 1119 aaKnown RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 DCAF12L1Q5VU92 463 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 TAX1BP1Q86VP1 789 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 LRRC34Q8IZ02 419 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 LMBR1Q8WVP7 490 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 TCP11Q8WWU5 503 aa23.12■■□□□ 1.29
USP48-205ENST00000421625 ARMCX3Q9UH62 379 aaPredicted RBP23.12■■□□□ 1.29
USP48-205ENST00000421625 SPDYE3A6NKU9 549 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 CYP11B2P19099 503 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 PAX7P23759 505 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 ERVK-5Q9HDB9 667 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 KCNG1Q9UIX4 513 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 PCDHA12Q9UN75 941 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 HOOK3Q86VS8 718 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 GLG1Q92896 1179 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 CUL5Q93034 780 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 ZDHHC18Q9NUE0 388 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 SLC12A4Q9UP95 1085 aa23.11■■□□□ 1.29
USP48-205ENST00000421625 BUB1BO60566 1050 aaPredicted RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 IFI35P80217 286 aaPredicted RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 EDRF1Q3B7T1 1238 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 RNF25Q96BH1 459 aaPredicted RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 SIX2Q9NPC8 291 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 AMFRQ9UKV5 643 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 PPP1R9AQ9ULJ8 1098 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 BAG3O95817 575 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 KRT18P05783 430 aaKnown RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 SMARCA1P28370 1054 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 GALCP54803 685 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 NBPF9Q3BBW0 867 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 FAM133BQ5BKY9 247 aaKnown RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 C16orf86Q6ZW13 317 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 SYCE1Q8N0S2 351 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 ANKS4BQ8N8V4 417 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 CCDC63Q8NA47 563 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 STAMBPL1Q96FJ0 436 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 AZI2Q9H6S1 392 aa23.1■■□□□ 1.29
USP48-205ENST00000421625 DDX60LQ5H9U9 1706 aaKnown RBP23.1■■□□□ 1.29
USP48-205ENST00000421625 CLTAP09496 248 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms