RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 MRPL44Q9H9J2 332 aaKnown RBP23.17■■□□□ 1.3
GPC1-202ENST00000420138 PRPF6O94906 941 aaKnown RBP23.17■■□□□ 1.3
GPC1-202ENST00000420138 PSAPP07602 524 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 SKILP12757 684 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 SWSAP1Q6NVH7 229 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 CCDC102AQ96A19 550 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 TMX1Q9H3N1 280 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 SEL1LQ9UBV2 794 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 TRAF3IP3Q9Y228 551 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 ITIH6Q6UXX5 1313 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 SYNGAP1Q96PV0 1343 aa23.17■■□□□ 1.3
GPC1-202ENST00000420138 PLXNB2O15031 1838 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 KIAA1217Q5T5P2 1943 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 NMT1P30419 496 aaKnown RBP23.16■■□□□ 1.3
GPC1-202ENST00000420138 NPEPPSP55786 919 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 FKBP3Q00688 224 aaKnown RBP23.16■■□□□ 1.3
GPC1-202ENST00000420138 SP4Q02446 784 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 KCNA1Q09470 495 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 KNOP1Q1ED39 458 aaKnown RBP23.16■■□□□ 1.3
GPC1-202ENST00000420138 WDR78Q5VTH9 848 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 PLA2G4FQ68DD2 849 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 TC2NQ8N9U0 490 aa23.16■■□□□ 1.3
GPC1-202ENST00000420138 SUPT20HL2P0C7V6 817 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 YY1P25490 414 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 EEPD1Q7L9B9 569 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 ZNF720Q7Z2F6 126 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 ATP6V0A1Q93050 837 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 STRA6Q9BX79 667 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 IGSF9BQ9UPX0 1349 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 FAM155AB1AL88 458 aaPredicted RBP23.15■■□□□ 1.3
GPC1-202ENST00000420138 EIF3DO15371 548 aaKnown RBP eCLIP23.15■■□□□ 1.3
GPC1-202ENST00000420138 FARP2O94887 1054 aaPredicted RBP23.15■■□□□ 1.3
GPC1-202ENST00000420138 GCNT3O95395 438 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 FGFR1OPO95684 399 aaKnown RBP23.15■■□□□ 1.3
GPC1-202ENST00000420138 TGFB3P10600 412 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 CCNA1P78396 465 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 EDRF1Q3B7T1 1238 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 PPP4R3CPQ6ZMV5 832 aa23.15■■□□□ 1.3
GPC1-202ENST00000420138 ZMYM2Q9UBW7 1377 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 IGKV6D-21A0A0A0MT36 114 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 B4DLN1 442 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 IGF2BP3O00425 579 aaKnown RBP eCLIP23.14■■□□□ 1.29
GPC1-202ENST00000420138 USO1O60763 962 aaKnown RBP23.14■■□□□ 1.29
GPC1-202ENST00000420138 ARIH2O95376 493 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 UBXN1Q04323 297 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 ZC2HC1CQ53FD0 456 aaPredicted RBP23.14■■□□□ 1.29
GPC1-202ENST00000420138 ODR4Q5SWX8 454 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 MIS18BP1Q6P0N0 1132 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 TMEM139Q8IV31 216 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 HHIPL1Q96JK4 782 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 CEP63Q96MT8 703 aa23.14■■□□□ 1.29
GPC1-202ENST00000420138 PDXKO00764 312 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 PPP1R37O75864 691 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 GYPCP04921 128 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 PRKCSHP14314 528 aaPredicted RBP23.13■■□□□ 1.29
GPC1-202ENST00000420138 ATP4AP20648 1035 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 MTIF2P46199 727 aaKnown RBP23.13■■□□□ 1.29
GPC1-202ENST00000420138 RBL2Q08999 1139 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 XKR9Q5GH70 373 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 PAXIP1Q6ZW49 1069 aaPredicted RBP23.13■■□□□ 1.29
GPC1-202ENST00000420138 MAEAQ7L5Y9 396 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 TRMT1LQ7Z2T5 733 aaKnown RBP23.13■■□□□ 1.29
GPC1-202ENST00000420138 PLXNA1Q9UIW2 1896 aa23.13■■□□□ 1.29
GPC1-202ENST00000420138 LOC102724159A0A0B4J2E5 919 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 A0A1W2PQC6 194 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 GSTTP1A0A1W2PQM5 241 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 TGFB1I1O43294 461 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 ADKP55263 362 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 INHBEP58166 350 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 PWP2Q15269 919 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 ZNF792Q3KQV3 632 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 FAM178BQ8IXR5 827 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 ZNF784Q8NCA9 323 aaPredicted RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 ZCCHC17Q9NP64 241 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 DDX41Q9UJV9 622 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 MAFBQ9Y5Q3 323 aaPredicted RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 LOXHD1Q8IVV2 1947 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 DKC1O60832 514 aaKnown RBP eCLIP23.12■■□□□ 1.29
GPC1-202ENST00000420138 DNM2P50570 870 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 MARSP56192 900 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 GRM1Q13255 1194 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 LY6KQ17RY6 165 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 PCYT2Q99447 389 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 MPHOSPH6Q99547 160 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 NOC4LQ9BVI4 516 aaKnown RBP23.12■■□□□ 1.29
GPC1-202ENST00000420138 TIPINQ9BVW5 301 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 IKZF4Q9H2S9 585 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 DOCK5Q9H7D0 1870 aa23.12■■□□□ 1.29
GPC1-202ENST00000420138 RNF225M0QZC1 329 aaPredicted RBP23.11■■□□□ 1.29
GPC1-202ENST00000420138 ADORA2AP29274 412 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 PRKCEQ02156 737 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 NEDD9Q14511 834 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 ABRAQ8N0Z2 381 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 GPRC5CQ9NQ84 441 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 PDLIM7Q9NR12 457 aa23.11■■□□□ 1.29
GPC1-202ENST00000420138 TYW1Q9NV66 732 aaKnown RBP23.11■■□□□ 1.29
GPC1-202ENST00000420138 PLS3P13797 630 aa23.1■■□□□ 1.29
GPC1-202ENST00000420138 FXR1P51114 621 aaKnown RBP eCLIP23.1■■□□□ 1.29
GPC1-202ENST00000420138 SREBF2Q12772 1141 aa23.1■■□□□ 1.29
GPC1-202ENST00000420138 ADAM9Q13443 819 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms