RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 MAPK10P53779 464 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 PHC1P78364 1004 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 IRF9Q00978 393 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 TBX2Q13207 712 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 INF2Q27J81 1249 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CCDC96Q2M329 555 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 CT83Q5H943 113 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 RSPO2Q6UXX9 243 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 TBC1D1Q86TI0 1168 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-207ENST00000419472 WNT8BQ93098 351 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 FBXW5Q969U6 566 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 UBXN10Q96LJ8 280 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 MIPEPQ99797 713 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 FOXQ1Q9C009 403 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 BLOC1S4Q9NUP1 217 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 TPCN1Q9ULQ1 816 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 GPR45Q9Y5Y3 372 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 ST14Q9Y5Y6 855 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 PTPRMP28827 1452 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 MBD5Q9P267 1494 aa6.02□□□□□ -1.45
VPS13A-207ENST00000419472 NEURL1BA8MQ27 555 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 TISP43B9A030 160 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 B9A039 149 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 GOLIM4O00461 696 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 HSD3B1P14060 373 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 HTR1BP28222 390 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CASP5P51878 434 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CPZQ66K79 652 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 GPAT2Q6NUI2 795 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 ZNF610Q8N9Z0 462 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 RTF1Q92541 710 aaKnown RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 NELL2Q99435 816 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 ZNF277Q9NRM2 450 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CRYL1Q9Y2S2 319 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 BACE2Q9Y5Z0 518 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SHANK2Q9UPX8 1470 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 MYOM3Q5VTT5 1437 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 TRAPPC8Q9Y2L5 1435 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 A0A1B0GVC2 190 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 RHPN2P1A8MT19 583 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 LSP1P33241 339 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CEBPAP49715 358 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 EIF5P55010 431 aaKnown RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SUZ12Q15022 739 aaKnown RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 KIZQ2M2Z5 673 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 NBPF8Q3BBV2 869 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 TTC9Q92623 222 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 C1GALT1C1Q96EU7 318 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 PPM1MQ96MI6 270 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 FCRL3Q96P31 734 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 BOCQ9BWV1 1114 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 ANO3Q9BYT9 981 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 IFT80Q9P2H3 777 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 STARD13Q9Y3M8 1113 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 ERBB4Q15303 1308 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 DDX3XO00571 662 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 WNT9AO14904 365 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 ALBP02768 609 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SMARCA1P28370 1054 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CAP2P40123 477 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 RNF4P78317 190 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 MPP1Q00013 466 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 PPFIA1Q13136 1202 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 TAF5Q15542 800 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 LETMD1Q6P1Q0 360 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SAPCD2Q86UD0 394 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CREBRFQ8IUR6 639 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 PRR18Q8N4B5 295 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 COA7Q96BR5 231 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 RSPH9Q9H1X1 276 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 GRHPRQ9UBQ7 328 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 CFDP1Q9UEE9 299 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SRPK3Q9UPE1 567 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 PHF24Q9UPV7 400 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 SF3B6Q9Y3B4 125 aaKnown RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 TCOF1Q13428 1488 aaKnown RBP6.01□□□□□ -1.45
VPS13A-207ENST00000419472 PREX1Q8TCU6 1659 aa6.01□□□□□ -1.45
VPS13A-207ENST00000419472 RPGRIP1LQ68CZ1 1315 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 ZC3H13Q5T200 1668 aaKnown RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 ADARB2-AS1A8MUL3 147 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 AURKAO14965 403 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 VEGFAP15692 232 aaPredicted RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 GRK3P35626 688 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 KIF11P52732 1056 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PRR20EP86478 221 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PRR20CP86479 221 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PRR20DP86480 221 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PRR20BP86481 221 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PRR20AP86496 221 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 HNRNPUQ00839 825 aaKnown RBP eCLIP6□□□□□ -1.45
VPS13A-207ENST00000419472 ANGEL2Q5VTE6 544 aaKnown RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 AGAP9Q5VTM2 703 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PDZD4Q76G19 769 aaPredicted RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 KRT78Q8N1N4 520 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6□□□□□ -1.45
VPS13A-207ENST00000419472 EAF2Q96CJ1 260 aaPredicted RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 CGRRF1Q99675 332 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 SSU72Q9NP77 194 aaKnown RBP6□□□□□ -1.45
VPS13A-207ENST00000419472 CNTNAP4Q9C0A0 1308 aa6□□□□□ -1.45
VPS13A-207ENST00000419472 TCRBV5S4A2TA0A5A2 114 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms