RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MARCH6O60337 910 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 FCER1AP12319 257 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 CLCN6P51797 869 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 TMEM132BQ14DG7 1078 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 CDC37Q16543 378 aaPredicted RBP16.37■□□□□ 0.21
USP4-203ENST00000415188 MAN2A1Q16706 1144 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 WHAMMP3Q1A5X7 153 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 FAM83BQ5T0W9 1011 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 TMCO3Q6UWJ1 677 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 KCTD1Q719H9 257 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 SRGAP1Q7Z6B7 1085 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 DPP9Q86TI2 863 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 NCAPG2Q86XI2 1143 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 SLFN12Q8IYM2 578 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 C7orf61Q8IZ16 206 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 SHCBP1Q8NEM2 672 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 HAS1Q92839 578 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 GOPCQ9HD26 462 aa16.37■□□□□ 0.21
USP4-203ENST00000415188 BMP2KQ9NSY1 1161 aaPredicted RBP16.37■□□□□ 0.21
USP4-203ENST00000415188 POTEMA6NI47 508 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 SPDYE4A6NLX3 237 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 TBX3O15119 743 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 KIF20AO95235 890 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 FOSP01100 380 aaPredicted RBP16.36■□□□□ 0.21
USP4-203ENST00000415188 TRIM21P19474 475 aaKnown RBP16.36■□□□□ 0.21
USP4-203ENST00000415188 TRAF1Q13077 416 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 MIIPQ5JXC2 388 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 TRPV1Q8NER1 839 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 ANO3Q9BYT9 981 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 EDEM3Q9BZQ6 932 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 PRO3102Q9H379 93 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 SEMA6BQ9H3T3 888 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 PCDHA12Q9UN75 941 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 PFASO15067 1338 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 PARP14Q460N5 1801 aa16.36■□□□□ 0.21
USP4-203ENST00000415188 IPO7O95373 1038 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 IGHA2P01877 340 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 HNRNPH3P31942 346 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 SLC16A2P36021 539 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 FAM193AP78312 1265 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 UTP14CQ5TAP6 766 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 SLC35F6Q8N357 371 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 DDX12PQ92771 950 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 SLF1Q9BQI6 1058 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 AMNQ9BXJ7 453 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 SLC39A2Q9NP94 309 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 KCNMB3Q9NPA1 279 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 PCDH10Q9P2E7 1040 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 ZMYND8Q9ULU4 1186 aaPredicted RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 ADAMTS5Q9UNA0 930 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 PCDHA1Q9Y5I3 950 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 EIF3CLB5ME19 914 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 STRNO43815 780 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 ZRANB2O95218 330 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP4-203ENST00000415188 TUBBP07437 444 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 CNGA1P29973 690 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 CHMP4BP1P59074 171 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 VWA3BQ502W6 1294 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 TEX35Q5T0J7 233 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 WDR59Q6PJI9 974 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 BTNL9Q6UXG8 535 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 MYOCDQ8IZQ8 938 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 KCTD17Q8N5Z5 321 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 EIF3CQ99613 913 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 MROH8Q9H579 483 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 ZNF446Q9NWS9 450 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 DDX20Q9UHI6 824 aaKnown RBP16.35■□□□□ 0.21
USP4-203ENST00000415188 PPP1R9AQ9ULJ8 1098 aa16.35■□□□□ 0.21
USP4-203ENST00000415188 ZNF236Q9UL36 1845 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 F5H6K3 240 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 VWA5AO00534 786 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 GNA14O95837 355 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 NDUFB10O96000 172 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 COL6A1P12109 1028 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 CYBAP13498 195 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 KLRC3Q07444 240 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 COASYQ13057 564 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 BRD3Q15059 726 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 HAUS3Q68CZ6 603 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 CCDC65Q8IXS2 484 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 REPS2Q8NFH8 660 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 ERMNQ8TAM6 284 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 DNAJC19Q96DA6 116 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 CEP63Q96MT8 703 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 CHP1Q99653 195 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 TSGA10Q9BZW7 698 aa16.34■□□□□ 0.21
USP4-203ENST00000415188 REXO2Q9Y3B8 237 aaKnown RBP16.34■□□□□ 0.21
USP4-203ENST00000415188 COL11A1P12107 1806 aaPredicted RBP16.33■□□□□ 0.2
USP4-203ENST00000415188 IDEP14735 1019 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 Q4G0T1 1027 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 FAM26FQ5R3K3 315 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 SYDE2Q5VT97 1194 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 OLFML2BQ68BL8 750 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 LRRC55Q6ZSA7 311 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 DYMQ7RTS9 669 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 FBXO11Q86XK2 927 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 CRYGNQ8WXF5 182 aa16.33■□□□□ 0.2
USP4-203ENST00000415188 PCMTD1Q96MG8 357 aaPredicted RBP16.33■□□□□ 0.2
USP4-203ENST00000415188 IRX2Q9BZI1 471 aaPredicted RBP16.33■□□□□ 0.2
USP4-203ENST00000415188 NDST4Q9H3R1 872 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms