RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 XKR9Q5GH70 373 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 PADI6Q6TGC4 694 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 TRIM50Q86XT4 487 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 SMARCE1Q969G3 411 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 CEP89Q96ST8 783 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 RUSC1Q9BVN2 902 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 TIPINQ9BVW5 301 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 GZF1Q9H116 711 aaPredicted RBP15.86■□□□□ 0.13
SF3B1-204ENST00000414963 BLZF1Q9H2G9 400 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 TUT1Q9H6E5 874 aaKnown RBP15.86■□□□□ 0.13
SF3B1-204ENST00000414963 XPNPEP3Q9NQH7 507 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 PDLIM7Q9NR12 457 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 CYP26B1Q9NR63 512 aa15.86■□□□□ 0.13
SF3B1-204ENST00000414963 ZNF215Q9UL58 517 aaPredicted RBP15.86■□□□□ 0.13
SF3B1-204ENST00000414963 SYCE3A1L190 88 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 KLRC4O43908 158 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 ZEB2O60315 1214 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 RPN1P04843 607 aaKnown RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 CASP1P29466 404 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 NPEPPSP55786 919 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 GIT2Q14161 759 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 LHX8Q68G74 356 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 CCSAPQ6IQ19 270 aaPredicted RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 FBXO46Q6PJ61 603 aaPredicted RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 TRIML1Q8N9V2 468 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 SH3TC2Q8TF17 1288 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 ERCC4Q92889 916 aaPredicted RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 CEP170P1Q96L14 293 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 FUCA2Q9BTY2 467 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 GTPBP4Q9BZE4 634 aaKnown RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 RNPEPQ9H4A4 650 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 RMND1Q9NWS8 449 aa15.85■□□□□ 0.13
SF3B1-204ENST00000414963 SEPT9Q9UHD8 586 aaPredicted RBP15.85■□□□□ 0.13
SF3B1-204ENST00000414963 FRMD3A2A2Y4 597 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 TMEM150BA6NC51 233 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 ZBTB42B2RXF5 422 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 HAS3O00219 553 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 DGAT1O75907 488 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 C6orf222P0C671 652 aaPredicted RBP15.84■□□□□ 0.13
SF3B1-204ENST00000414963 RFC5P40937 340 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 IRX5P78411 483 aaPredicted RBP15.84■□□□□ 0.13
SF3B1-204ENST00000414963 PURAQ00577 322 aaKnown RBP15.84■□□□□ 0.13
SF3B1-204ENST00000414963 BEX3Q00994 111 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 SLC9C1Q4G0N8 1177 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 ZNF484Q5JVG2 852 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 GNASQ5JWF2 1037 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 PLA2G4FQ68DD2 849 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 UNC13DQ70J99 1090 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 EXOC8Q8IYI6 725 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 KAT2BQ92831 832 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 MAN1B1Q9UKM7 699 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 ODF2LQ9ULJ1 636 aa15.84■□□□□ 0.13
SF3B1-204ENST00000414963 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 MYADML2A6NDP7 307 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 RHOBTB3O94955 611 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 PGK1P00558 417 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 ZNF286BP0CG31 522 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 MARK3P27448 753 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 ZNF131P52739 623 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 ASIC1P78348 528 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 EHHADHQ08426 723 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 MORC3Q14149 939 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 SASS6Q6UVJ0 657 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 DYMQ7RTS9 669 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 CCDC65Q8IXS2 484 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 CCDC47Q96A33 483 aaKnown RBP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 CCDC43Q96MW1 224 aaKnown RBP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 REEP2Q9BRK0 252 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 DHX33Q9H6R0 707 aaKnown RBP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 PAK6Q9NQU5 681 aaPredicted RBP15.83■□□□□ 0.12
SF3B1-204ENST00000414963 COL1A2P08123 1366 aa15.83■□□□□ 0.12
SF3B1-204ENST00000414963 WDR81Q562E7 1941 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 NPHP3-ACAD11A0A0J9YXS1 232 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 MAFO75444 373 aaPredicted RBP15.82■□□□□ 0.12
SF3B1-204ENST00000414963 KRT18P05783 430 aaKnown RBP15.82■□□□□ 0.12
SF3B1-204ENST00000414963 MYL3P08590 195 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 CCDC192P0DO97 292 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 PSMD2Q13200 908 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 MTERF2Q49AM1 385 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 KMT5BQ4FZB7 885 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 LRSAM1Q6UWE0 723 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 RNF180Q86T96 592 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 PCSK9Q8NBP7 692 aaKnown RBP15.82■□□□□ 0.12
SF3B1-204ENST00000414963 MCPH1Q8NEM0 835 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 ARMC5Q96C12 935 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 TSEN34Q9BSV6 310 aaKnown RBP15.82■□□□□ 0.12
SF3B1-204ENST00000414963 MTG1Q9BT17 334 aaPredicted RBP15.82■□□□□ 0.12
SF3B1-204ENST00000414963 KATNAL1Q9BW62 490 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 PRDM10Q9NQV6 1147 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 PANK4Q9NVE7 773 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 TRPC6Q9Y210 931 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 LOXHD1Q8IVV2 1947 aa15.82■□□□□ 0.12
SF3B1-204ENST00000414963 IGKV6-21A0A0C4DH24 114 aa15.81■□□□□ 0.12
SF3B1-204ENST00000414963 RRN3P2A6NIE6 340 aa15.81■□□□□ 0.12
SF3B1-204ENST00000414963 GAS2O43903 313 aaKnown RBP15.81■□□□□ 0.12
SF3B1-204ENST00000414963 USO1O60763 962 aaKnown RBP15.81■□□□□ 0.12
SF3B1-204ENST00000414963 INSRRP14616 1297 aa15.81■□□□□ 0.12
SF3B1-204ENST00000414963 GAP43P17677 238 aa15.81■□□□□ 0.12
SF3B1-204ENST00000414963 BMP6P22004 513 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms