RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SLC12A3P55017 1021 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 PNOCQ13519 176 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 KCNA10Q16322 511 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 LHX8Q68G74 356 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 SH3RF1Q7Z6J0 888 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 ELOA2Q8IYF1 753 aaPredicted RBP20.12■□□□□ 0.81
SDC1-203ENST00000403076 ARRDC4Q8NCT1 418 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 KLHDC9Q8NEP7 349 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 RNPEPQ9H4A4 650 aa20.12■□□□□ 0.81
SDC1-203ENST00000403076 CST5P28325 142 aaPredicted RBP20.11■□□□□ 0.81
SDC1-203ENST00000403076 CASP1P29466 404 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 PSEN2P49810 448 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 NKX3-2P78367 333 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 PURAQ00577 322 aaKnown RBP20.11■□□□□ 0.81
SDC1-203ENST00000403076 LRRC41Q15345 812 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 PADI6Q6TGC4 694 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 DYMQ7RTS9 669 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 ZNF333Q96JL9 665 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 MTRQ99707 1265 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 MTG1Q9BT17 334 aaPredicted RBP20.11■□□□□ 0.81
SDC1-203ENST00000403076 KATNAL1Q9BW62 490 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 NIFKQ9BYG3 293 aaKnown RBP20.11■□□□□ 0.81
SDC1-203ENST00000403076 CYP26B1Q9NR63 512 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 WDR81Q562E7 1941 aa20.11■□□□□ 0.81
SDC1-203ENST00000403076 MYMKA6NI61 221 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 USO1O60763 962 aaKnown RBP20.1■□□□□ 0.81
SDC1-203ENST00000403076 SMC2O95347 1197 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 F2P00734 622 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 ASGR1P07306 291 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 PRR29P0C7W0 189 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 CYP11B2P19099 503 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 MDM2Q00987 491 aaPredicted RBP20.1■□□□□ 0.81
SDC1-203ENST00000403076 RAD51AP2Q09MP3 1159 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 CUL4BQ13620 913 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 MFSD10Q14728 455 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 KIAA0753Q2KHM9 967 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 RINT1Q6NUQ1 792 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 CXCL17Q6UXB2 119 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 ERCC4Q92889 916 aaPredicted RBP20.1■□□□□ 0.81
SDC1-203ENST00000403076 VTI1AQ96AJ9 217 aa20.1■□□□□ 0.81
SDC1-203ENST00000403076 GZF1Q9H116 711 aaPredicted RBP20.1■□□□□ 0.81
SDC1-203ENST00000403076 PAK6Q9NQU5 681 aaPredicted RBP20.1■□□□□ 0.81
SDC1-203ENST00000403076 MYL1P05976 194 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 INSRRP14616 1297 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 ASIC1P78348 528 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 DDX12PQ92771 950 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 KAT2BQ92831 832 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 ARMC5Q96C12 935 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 C7orf25Q9BPX7 421 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 RUSC1Q9BVN2 902 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 TRIM9Q9C026 710 aa20.09■□□□□ 0.81
SDC1-203ENST00000403076 NPHP3-ACAD11A0A0J9YXS1 232 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 KBTBD13C9JR72 458 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 LETM1O95202 739 aaPredicted RBP20.08■□□□□ 0.81
SDC1-203ENST00000403076 POLGP54098 1239 aaPredicted RBP20.08■□□□□ 0.81
SDC1-203ENST00000403076 IGBP1P78318 339 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 ZNF484Q5JVG2 852 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 SMARCE1Q969G3 411 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 KCND2Q9NZV8 630 aa20.08■□□□□ 0.81
SDC1-203ENST00000403076 IDEP14735 1019 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 TBC1D8BQ0IIM8 1120 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 DPYDQ12882 1025 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 PPFIA1Q13136 1202 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 ARSHQ5FYA8 562 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 C1orf186Q6ZWK4 172 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 MAEAQ7L5Y9 396 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 CCDC47Q96A33 483 aaKnown RBP20.07■□□□□ 0.8
SDC1-203ENST00000403076 TSEN34Q9BSV6 310 aaKnown RBP20.07■□□□□ 0.8
SDC1-203ENST00000403076 MCOLN1Q9GZU1 580 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 ZHX3Q9H4I2 956 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 PPME1Q9Y570 386 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 PCDHA5Q9Y5H7 936 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 DGAT1O75907 488 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 RFC5P40937 340 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 CACNB1Q02641 598 aaPredicted RBP20.07■□□□□ 0.8
SDC1-203ENST00000403076 TARBP2Q15633 366 aaKnown RBP20.07■□□□□ 0.8
SDC1-203ENST00000403076 CCSAPQ6IQ19 270 aaPredicted RBP20.07■□□□□ 0.8
SDC1-203ENST00000403076 TRAPPC12Q8WVT3 735 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 SLC7A3Q8WY07 619 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 ATP6V0A4Q9HBG4 840 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 KIAA1468Q9P260 1216 aa20.07■□□□□ 0.8
SDC1-203ENST00000403076 MOXD2PA6NHM9 499 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 HAS3O00219 553 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 TBCAO75347 108 aaKnown RBP20.06■□□□□ 0.8
SDC1-203ENST00000403076 CABYRO75952 493 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 TFRCP02786 760 aaKnown RBP20.06■□□□□ 0.8
SDC1-203ENST00000403076 RPN1P04843 607 aaKnown RBP20.06■□□□□ 0.8
SDC1-203ENST00000403076 SMIM10L2AP0DMW4 78 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 SMIM10L2BP0DMW5 78 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 ACLYP53396 1101 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 GIT2Q14161 759 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 EXOC8Q8IYI6 725 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 C7orf31Q8N865 590 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 PPP1R13LQ8WUF5 828 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 REEP2Q9BRK0 252 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 POLD4Q9HCU8 107 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 LOXHD1Q8IVV2 1947 aa20.06■□□□□ 0.8
SDC1-203ENST00000403076 RRN3P2A6NIE6 340 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 FAM13AO94988 1023 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 GJB1P08034 283 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms