RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ABHD15Q6UXT9 468 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 PLPPR4Q7Z2D5 763 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 RSPH3Q86UC2 560 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 CCDC60Q8IWA6 550 aaPredicted RBP11.74□□□□□ -0.53
NEDD8-202ENST00000396828 CRYGNQ8WXF5 182 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 BARHL2Q9NY43 387 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.74□□□□□ -0.53
NEDD8-202ENST00000396828 PCDHGC5Q9Y5F6 944 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 PCDHA2Q9Y5H9 948 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 NFASCO94856 1347 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 EVPLQ92817 2033 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 IGLV3-22A0A075B6J6 115 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 RRN3P2A6NIE6 340 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 GOLGA8AA7E2F4 631 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 GOLGA8BA8MQT2 603 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 ZBTB42B2RXF5 422 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 MGEA5O60502 916 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 PFKFB2O60825 505 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 RB1P06400 928 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 IBSPP21815 317 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 PDIA3P30101 505 aaKnown RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 SSTR3P32745 418 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 IRS1P35568 1242 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 SREBF1P36956 1147 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 ADCY7P51828 1080 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 STK3Q13188 491 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 CUL4AQ13619 759 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 PAN2Q504Q3 1202 aaKnown RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 IER5Q5VY09 327 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 MTHFD1LQ6UB35 978 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 ADGRD2Q7Z7M1 963 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 SPRYD3Q8NCJ5 442 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 TMEM40Q8WWA1 233 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 INTS4Q96HW7 963 aaKnown RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 SDF4Q9BRK5 362 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 CELF4Q9BZC1 486 aaKnown RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 IGFLR1Q9H665 355 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 AZI2Q9H6S1 392 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 RBM28Q9NW13 759 aaKnown RBP11.73□□□□□ -0.53
NEDD8-202ENST00000396828 HCSTQ9UBK5 93 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 PLAGL2Q9UPG8 496 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 IGSF9BQ9UPX0 1349 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 TRPV2Q9Y5S1 764 aa11.73□□□□□ -0.53
NEDD8-202ENST00000396828 PLXNA4Q9HCM2 1894 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 SMIM35A0A1B0GVV1 85 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 EDIL3O43854 480 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 TBX10O75333 385 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 ITGB1P05556 798 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 KLRC1P26715 233 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 METAP2P50579 478 aaKnown RBP eCLIP11.72□□□□□ -0.53
NEDD8-202ENST00000396828 RCAN1P53805 252 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 ZP2Q05996 745 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 PKN1Q16512 942 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 PPP1R18Q6NYC8 613 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 CCDC83Q8IWF9 413 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 KIAA0319LQ8IZA0 1049 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 SPPL3Q8TCT6 385 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 GTF3C6Q969F1 213 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 FAM122AQ96E09 287 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 PPP1R16BQ96T49 567 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 C11orf84Q9BUA3 381 aaPredicted RBP11.72□□□□□ -0.53
NEDD8-202ENST00000396828 GINS2Q9Y248 185 aa11.72□□□□□ -0.53
NEDD8-202ENST00000396828 NOC2LQ9Y3T9 749 aaKnown RBP11.72□□□□□ -0.53
NEDD8-202ENST00000396828 USP34Q70CQ2 3546 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 CCDC196A0A1B0GTZ2 297 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 C19orf67A6NJJ6 358 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 CPLX1O14810 134 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 LARGE1O95461 756 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 FOSP01100 380 aaPredicted RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 MMP1P03956 469 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 KRT76Q01546 638 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 NFX1Q12986 1120 aaKnown RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 PAK2Q13177 524 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 PFKFB3Q16875 520 aaPredicted RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 FAM102BQ5T8I3 360 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 SWSAP1Q6NVH7 229 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 CPLX2Q6PUV4 134 aaKnown RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 TRMT1LQ7Z2T5 733 aaKnown RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 PLA2G4DQ86XP0 818 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 NECAB1Q8N987 351 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 KLHL23Q8NBE8 558 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 RASGRP4Q8TDF6 673 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 LLPHQ9BRT6 129 aaKnown RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 LMAN2LQ9H0V9 348 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 ERVK-5Q9HDB9 667 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 SQORQ9Y6N5 450 aa11.71□□□□□ -0.53
NEDD8-202ENST00000396828 FNDC1Q4ZHG4 1894 aaPredicted RBP11.71□□□□□ -0.53
NEDD8-202ENST00000396828 MUC6Q6W4X9 2439 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 KDM3AQ9Y4C1 1321 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 IPO5O00410 1097 aaKnown RBP11.7□□□□□ -0.54
NEDD8-202ENST00000396828 BACH1O14867 736 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 MBTPS2O43462 519 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 SCG2P13521 617 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 ZNF76P36508 570 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 CCT2P78371 535 aaKnown RBP11.7□□□□□ -0.54
NEDD8-202ENST00000396828 RBM10P98175 930 aaKnown RBP11.7□□□□□ -0.54
NEDD8-202ENST00000396828 SCRN1Q12765 414 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 AP3B2Q13367 1082 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 ADAM15Q13444 863 aa11.7□□□□□ -0.54
NEDD8-202ENST00000396828 PUS10Q3MIT2 529 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms