RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 EFCAB8A8MWE9 144 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 TISP43B9A030 160 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 SRGAP2O75044 1071 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 DSG3P32926 999 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 CDK17Q00537 523 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 DEF6Q9H4E7 631 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 PCDHA13Q9Y5I0 950 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 SSC5DA1L4H1 1573 aa16.57■□□□□ 0.24
GPC3-202ENST00000394299 AKR1B10O60218 316 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 USP2O75604 605 aaPredicted RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 ATP1A1P05023 1023 aaKnown RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 ZNF131P52739 623 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 NPEPPSP55786 919 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 DPY19L2P1Q6NXN4 242 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 FRMD5Q7Z6J6 570 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 RDH13Q8NBN7 331 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 CCDC94Q9BW85 323 aaPredicted RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 GPRC5CQ9NQ84 441 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 ZNF446Q9NWS9 450 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 POLR2AP24928 1970 aaKnown RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 USO1O60763 962 aaKnown RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 ZSCAN20P17040 1043 aaPredicted RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 CYP2J2P51589 502 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 CBX1P83916 185 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 TDRD12Q587J7 1177 aaKnown RBP16.56■□□□□ 0.24
GPC3-202ENST00000394299 PLA2G4FQ68DD2 849 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 GPC2Q8N158 579 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 MLXIPQ9HAP2 919 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 CEP72Q9P209 647 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 FAM184BQ9ULE4 1060 aa16.56■□□□□ 0.24
GPC3-202ENST00000394299 IPO7O95373 1038 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 NR3C2P08235 984 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 XRCC5P13010 732 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 QARSP47897 775 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 RARRES1P49788 294 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 SP4Q02446 784 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 SPA17Q15506 151 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 GJB7Q6PEY0 223 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 CATSPERGQ6ZRH7 1159 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 RSRC2Q7L4I2 434 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 NIPA1Q7RTP0 329 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 FAM133AQ8N9E0 248 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 SLC35C1Q96A29 364 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 IFIH1Q9BYX4 1025 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 GANQ9H2C0 597 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 SALL4Q9UJQ4 1053 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 AJAP1Q9UKB5 411 aaPredicted RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 AFG3L2Q9Y4W6 797 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 RGS20O76081 388 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 AFPP02771 609 aaKnown RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 H2AFXP16104 143 aaPredicted RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 LMNB1P20700 586 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 CLCN6P51797 869 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 VAV2P52735 878 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 AMPD2Q01433 879 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 RAPGEF1Q13905 1077 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 ASTE1Q2TB18 679 aaPredicted RBP16.55■□□□□ 0.24
GPC3-202ENST00000394299 DNAAF5Q86Y56 855 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 KCTD17Q8N5Z5 321 aa16.55■□□□□ 0.24
GPC3-202ENST00000394299 ADM5C9JUS6 153 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 BACH1O14867 736 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 KRT86O43790 486 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 MUTP22033 750 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 GUCY2CP25092 1073 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 PON1P27169 355 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 YWHABP31946 246 aaKnown RBP16.54■□□□□ 0.24
GPC3-202ENST00000394299 FSTL1Q12841 308 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 SFMBT2Q5VUG0 894 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.54■□□□□ 0.24
GPC3-202ENST00000394299 VSIG10LQ86VR7 867 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 IQCDQ96DY2 449 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 BORCS6Q96GS4 357 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 MYO1AQ9UBC5 1043 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 ADAMTS5Q9UNA0 930 aa16.54■□□□□ 0.24
GPC3-202ENST00000394299 EIF3DO15371 548 aaKnown RBP eCLIP16.53■□□□□ 0.242e-9■□□□□ 9.2
GPC3-202ENST00000394299 EPB41P11171 864 aaKnown RBP16.53■□□□□ 0.24
GPC3-202ENST00000394299 RPL13P26373 211 aaKnown RBP16.53■□□□□ 0.24
GPC3-202ENST00000394299 KIF5AQ12840 1032 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 TREML2Q5T2D2 321 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 SRGAP1Q7Z6B7 1085 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 ZSWIM2Q8NEG5 633 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.53■□□□□ 0.241e-323■■■□□ 19.2
GPC3-202ENST00000394299 PCIF1Q9H4Z3 704 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 TBC1D22BQ9NU19 505 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 ODF2LQ9ULJ1 636 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 MYO6Q9UM54 1294 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 FHOD1Q9Y613 1164 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 DOCK1Q14185 1865 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 MOCS3O95396 460 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 PNMA6AP0CW24 399 aaPredicted RBP16.53■□□□□ 0.24
GPC3-202ENST00000394299 SOX10P56693 466 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 CHMP4BP1P59074 171 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 VGLL4Q14135 290 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 UPF1Q92900 1129 aaKnown RBP eCLIP16.53■□□□□ 0.245e-6■□□□□ 8.7
GPC3-202ENST00000394299 C12orf42Q96LP6 360 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 DRC1Q96MC2 740 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 FHDC1Q9C0D6 1143 aaPredicted RBP16.53■□□□□ 0.24
GPC3-202ENST00000394299 A1CFQ9NQ94 594 aaKnown RBP16.53■□□□□ 0.24
GPC3-202ENST00000394299 AGPAT3Q9NRZ7 376 aa16.53■□□□□ 0.24
GPC3-202ENST00000394299 MAP3K20Q9NYL2 800 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms