RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC22O60826 627 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GAP43P17677 238 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 TSPY1Q01534 308 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 CAV1Q03135 178 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 TAF1BQ53T94 588 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 RIN2Q8WYP3 895 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GOLPH3LQ9H4A5 285 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 COG4Q9H9E3 785 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ADCY3O60266 1144 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ZNF211Q13398 564 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 CYFIP2Q96F07 1278 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 SLC13A1Q9BZW2 595 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 POLD4Q9HCU8 107 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GDAQ9Y2T3 454 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 KRT38O76015 456 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 COPS2P61201 443 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GRM1Q13255 1194 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 CRYMQ14894 314 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 NAIF1Q69YI7 327 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 TRAF7Q6Q0C0 670 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 JDP2Q8WYK2 163 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 HSPH1Q92598 858 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 LRRC1Q9BTT6 524 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ADNPQ9H2P0 1102 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 NOD1Q9Y239 953 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 M0R2C6 588 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 VCAM1P19320 739 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 TAC1P20366 129 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 ARL4AP40617 200 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 CTCFP49711 727 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 KLHL38Q2WGJ6 581 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 PDXDC1Q6P996 788 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 KIF2BQ8N4N8 673 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 USP40Q9NVE5 1235 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 LGALS16A8MUM7 142 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 MKRN3Q13064 507 aaKnown RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 VPS11Q9H270 941 aa12.67□□□□□ -0.38
SYNPO-202ENST00000394243 GPHNQ9NQX3 736 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 CHCHD3Q9NX63 227 aaKnown RBP12.67□□□□□ -0.38
SYNPO-202ENST00000394243 DYTNA2CJ06 578 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 POLR2MP0CAP2 368 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 CHN1P15882 459 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 LSP1P33241 339 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 POLGP54098 1239 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 LRRC8EQ6NSJ5 796 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 AIFM3Q96NN9 605 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 GGA1Q9UJY5 639 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 LRRC53A6NM62 1247 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 KPNA7A9QM74 516 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 MEIS1O00470 390 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 UBE3AQ05086 875 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 LRRC63Q05C16 580 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 TEKT4Q8WW24 435 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 VIPAS39Q9H9C1 493 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 SUGCTQ9HAC7 445 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 PSD3Q9NYI0 1048 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 KIAA0232Q92628 1395 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 NPC1L1Q9UHC9 1359 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 PRPSAP2O60256 369 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 PARP10Q53GL7 1025 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 BRDTQ58F21 947 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 DPP8Q6V1X1 898 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 AGGF1Q8N302 714 aaeCLIP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 SPATA4Q8NEY3 305 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 FAM149B1Q96BN6 582 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 ACCSQ96QU6 501 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 ZBTB18Q99592 522 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 FNDC3AQ9Y2H6 1198 aaKnown RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 ALDH18A1P54886 795 aaKnown RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 BTKQ06187 659 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 KRT27Q7Z3Y8 459 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 FBXO11Q86XK2 927 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 FBXO2Q9UK22 296 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 USP15Q9Y4E8 981 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-202ENST00000394243 ZNF185O15231 689 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 POLA2Q14181 598 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 TRPM8Q7Z2W7 1104 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 HIC2Q96JB3 615 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 IFT140Q96RY7 1462 aa12.66□□□□□ -0.38
SYNPO-202ENST00000394243 TRIM49BA6NDI0 452 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 PRAMEP78395 509 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 OR9Q1Q8NGQ5 310 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 ALG13Q9NP73 1137 aaKnown RBP12.65□□□□□ -0.38
SYNPO-202ENST00000394243 PKD2L2Q9NZM6 624 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 ZRANB2O95218 330 aaKnown RBP eCLIP12.65□□□□□ -0.38
SYNPO-202ENST00000394243 FGFR4P22455 802 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 ZMYM1Q5SVZ6 1142 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 TLR7Q9NYK1 1049 aaKnown RBP12.65□□□□□ -0.38
SYNPO-202ENST00000394243 ANAPC7Q9UJX3 599 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 AURKCQ9UQB9 309 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 CHMP2BQ9UQN3 213 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 PARP3Q9Y6F1 533 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 TOPBP1Q92547 1522 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 KDM5BQ9UGL1 1544 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 CASP1P29466 404 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 LAMB3Q13751 1172 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 PPP1R2P3Q6NXS1 205 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 IP6K1Q92551 441 aa12.65□□□□□ -0.38
SYNPO-202ENST00000394243 OLFML3Q9NRN5 406 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms